| barplot_data | Generate barplots |
| combination_index | compute combination index |
| generate_report | Word report generation |
| load_MACSQuant | Load xls file from maxQuant 96-well-plate device |
| MACSQuant | The MACSQuant Class |
| MACSQuant-class | The MACSQuant Class |
| new_class_MQ | Create a new MACSQuant object |
| on_plate_selection | Sort experimental design on graphical 96-well-plate |
| pipeline | pipeline with report generation |
| rData | accessor function to access raw data |
| setPath | sets custom output path |
| sorted | accessor function to access sorted data |