Package: StructuralVariantAnnotation
Type: Package
Title: Variant annotations for structural variants
Version: 1.26.0
Date: 2024-04-23
Authors@R: c(
	person("Daniel", "Cameron", email="daniel.l.cameron@gmail.com", role=c("aut", "cre"), comment=c(ORCID = "0000-0002-0951-7116")),
	person("Ruining", "Dong", role=c("aut"), comment=c(ORCID = "0000-0003-1433-0484")))
Description: StructuralVariantAnnotation provides a framework for
        analysis of structural variants within the Bioconductor
        ecosystem. This package contains contains useful helper
        functions for dealing with structural variants in VCF format.
        The packages contains functions for parsing VCFs from a number
        of popular callers as well as functions for dealing with
        breakpoints involving two separate genomic loci encoded as
        GRanges objects.
License: GPL-3 + file LICENSE
Depends: GenomicRanges, rtracklayer, VariantAnnotation, BiocGenerics, R
        (>= 4.1.0)
Imports: assertthat, Biostrings, pwalign, stringr, dplyr, methods,
        rlang, GenomicFeatures, IRanges, S4Vectors,
        SummarizedExperiment, GenomeInfoDb,
Suggests: ggplot2, devtools, testthat (>= 2.1.0), roxygen2, rmarkdown,
        tidyverse, knitr, ggbio, biovizBase,
        TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
RoxygenNote: 7.1.1
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: DataImport, Sequencing, Annotation, Genetics,
        VariantAnnotation
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:52:25 UTC
RemoteUrl: https://github.com/bioc/StructuralVariantAnnotation
RemoteRef: RELEASE_3_22
RemoteSha: 328c319a0a8eb36957cfff50f0ecc0ccf3b42919
NeedsCompilation: no
Packaged: 2025-11-18 07:33:34 UTC; root
Author: Daniel Cameron [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0951-7116>),
  Ruining Dong [aut] (ORCID: <https://orcid.org/0000-0003-1433-0484>)
Maintainer: Daniel Cameron <daniel.l.cameron@gmail.com>
Built: R 4.5.2; ; 2025-11-18 07:37:11 UTC; windows
