| accessors | Accessors for TsIO objects |
| beads_oligo | Accessors for TsIO objects |
| beads_oligo-method | TsIO class |
| beads_oligo<- | Accessors for TsIO objects |
| beads_oligo<--method | TsIO class |
| blastPrimers | Estimate primer off-targets using BLAST |
| blastPrimers-method | Estimate primer off-targets using BLAST |
| bone_marrow_genex | Mouse bone marrow 10x data |
| checkPrimers | Check primers for complementarity |
| checkPrimers-method | Check primers for complementarity |
| chr11_genes | Chromosome 11 genes |
| chr11_polyA_sites | Chromosome 11 polyA sites |
| chr11_primers | Chromosome 11 primers |
| chr11_truncated_txs | Chromosome 11 truncated transcripts |
| chr11_truncated_txs_seq | Chromosome 11 truncated transcript sequences |
| createBLASTDb | Estimate primer off-targets using BLAST |
| createIORecord | Create boulder IO record |
| createIORecord-method | Create boulder IO record |
| createPrimerTrack | Export TAP-seq primers |
| createPrimerTrack-method | Export TAP-seq primers |
| designPrimers | Design primers |
| designPrimers-method | Design primers |
| estimateOffTargets | Estimate primer off-targets using BLAST |
| exportPrimers | Export TAP-seq primers |
| exportPrimerTrack | Export TAP-seq primers |
| getTxsSeq | Get transcript sequences |
| getTxsSeq-method | Get transcript sequences |
| inferPolyASites | Infer polyA sites from droplet sequencing data |
| min_primer_region | Accessors for TsIO objects |
| min_primer_region-method | TsIO class |
| min_primer_region<- | Accessors for TsIO objects |
| min_primer_region<--method | TsIO class |
| pcr_products | Accessors for TsIO objects |
| pcr_products-method | TsIO class |
| pcr_products-method | TsIOList class |
| pickPrimers | Pick best TAP-seq primers |
| pickPrimers-method | Pick best TAP-seq primers |
| plotTargetGenes | Select target genes |
| primerDataFrame | Export TAP-seq primers |
| primerDataFrame-method | Export TAP-seq primers |
| primer_max_tm | Accessors for TsIO objects |
| primer_max_tm-method | TsIO class |
| primer_max_tm<- | Accessors for TsIO objects |
| primer_max_tm<--method | TsIO class |
| primer_min_tm | Accessors for TsIO objects |
| primer_min_tm-method | TsIO class |
| primer_min_tm<- | Accessors for TsIO objects |
| primer_min_tm<--method | TsIO class |
| primer_num_return | Accessors for TsIO objects |
| primer_num_return-method | TsIO class |
| primer_num_return<- | Accessors for TsIO objects |
| primer_num_return<--method | TsIO class |
| primer_opt_tm | Accessors for TsIO objects |
| primer_opt_tm-method | TsIO class |
| primer_opt_tm<- | Accessors for TsIO objects |
| primer_opt_tm<--method | TsIO class |
| product_size_range | Accessors for TsIO objects |
| product_size_range-method | TsIO class |
| product_size_range<- | Accessors for TsIO objects |
| product_size_range<--method | TsIO class |
| reverse_primer | Accessors for TsIO objects |
| reverse_primer-method | TsIO class |
| reverse_primer<- | Accessors for TsIO objects |
| reverse_primer<--method | TsIO class |
| selectTargetGenes | Select target genes |
| sequence_id | Accessors for TsIO objects |
| sequence_id-method | TsIO class |
| sequence_id-method | TsIOList class |
| sequence_id<- | Accessors for TsIO objects |
| sequence_id<--method | TsIO class |
| sequence_template | Accessors for TsIO objects |
| sequence_template-method | TsIO class |
| sequence_template-method | TsIOList class |
| TAPseq | TAPseq: R-package to design primers for TAP-seq |
| TAPseqInput | Create TAPseq input from target sequences |
| tapseq_primers | Accessors for TsIO objects |
| tapseq_primers-method | TsIO class |
| tapseq_primers-method | TsIOList class |
| target_annot | Accessors for TsIO objects |
| target_annot-method | TsIO class |
| target_annot-method | TsIOList class |
| target_annot<- | Accessors for TsIO objects |
| target_annot<--method | TsIO class |
| target_sequence | Accessors for TsIO objects |
| target_sequence-method | TsIO class |
| target_sequence-method | TsIOList class |
| target_sequence<- | Accessors for TsIO objects |
| target_sequence<--method | TsIO class |
| truncateTxsPolyA | Truncate transcripts at polyA sites |
| truncateTxsPolyA-method | Truncate transcripts at polyA sites |
| TsIO | TsIO class |
| TsIO-class | TsIO class |
| TsIOList | TsIOList class |
| TsIOList-class | TsIOList class |