Ishikawa                Contains genomic regions of transcription
                        factors at the ranges side and the name of the
                        transcription factors at the metadata side.
TF_acc_w_0              Contains an output of the accumulation
                        function.
TF_dense_w_0            Contains an output of the dense_zones function.
TF_dense_w_10           Contains an output of the dense_zones function.
TF_dense_w_100          Contains an output of the dense_zones function.
TF_dense_w_1000         Contains an output of the dense_zones function.
TF_dense_w_10000        Contains an output of the dense_zones function.
accumulation            Creates a vector with accumulation counts of
                        transcription factors for each chromosome base.
base_dense_w_10         Contains an output of the dense_zones function.
dense_zones             Finds transcription factor dense DNA zones for
                        different accumulation threshold values.
high_accumulation_zones
                        Finds transcription factor high accumulation
                        DNA zones.
n_zones_PCA             Principal Component Analysis of the number of
                        dense zones obtained with the three methods of
                        accumulation (TF, region, base).
plot_accumulation       Plots the accumulation vector obtained with the
                        accumulation function.
plot_n_zones            Plots the number of dense zones for each
                        threshold value.
reg_dense_w_10          Contains an output of the dense_zones function.
w_analysis              Shows the number of dense zones obtained with
                        different values of base neighborhood window
                        width.
