| $-method | The PseudotimeOrdering class | 
| $<--method | The PseudotimeOrdering class | 
| averagePseudotime | Compute the average pseudotime | 
| cellData | The PseudotimeOrdering class | 
| cellData<- | The PseudotimeOrdering class | 
| cellData<--method | The PseudotimeOrdering class | 
| cellnames | The PseudotimeOrdering class | 
| cellnames<- | The PseudotimeOrdering class | 
| cellnames<--method | The PseudotimeOrdering class | 
| createClusterMST | Minimum spanning trees on cluster centroids | 
| createClusterMST-method | Minimum spanning trees on cluster centroids | 
| defineMSTPaths | Define paths through the MST | 
| guessMSTRoots | Guess the roots of a MST | 
| ncells | The PseudotimeOrdering class | 
| npaths | The PseudotimeOrdering class | 
| pathData | The PseudotimeOrdering class | 
| pathData<- | The PseudotimeOrdering class | 
| pathData<--method | The PseudotimeOrdering class | 
| pathnames | The PseudotimeOrdering class | 
| pathnames<- | The PseudotimeOrdering class | 
| pathnames<--method | The PseudotimeOrdering class | 
| pathStat | The PseudotimeOrdering class | 
| pathStat<- | The PseudotimeOrdering class | 
| pathStat<--method | The PseudotimeOrdering class | 
| pathStatNames | The PseudotimeOrdering class | 
| pathStatNames<- | The PseudotimeOrdering class | 
| pathStatNames<--method | The PseudotimeOrdering class | 
| pathStats | The PseudotimeOrdering class | 
| pathStats<- | The PseudotimeOrdering class | 
| pathStats<--method | The PseudotimeOrdering class | 
| PseudotimeOrdering | The PseudotimeOrdering class | 
| PseudotimeOrdering-class | The PseudotimeOrdering class | 
| rowmean | Compute column means based on a grouping variable | 
| rowmedian | Compute column means based on a grouping variable | 
| show-method | The PseudotimeOrdering class | 
| splitByBranches | Split a graph into branch-free paths |