# Generated by roxygen2: do not edit by hand

export(affyLinks)
export(affystart)
export(annotateEset)
export(doGlimma)
export(ensemblLinks)
export(entrezLinks)
export(getMainProbes)
export(goLinks)
export(makeGoTable)
export(makeHmap)
export(makeImages)
export(makeVenn)
export(maplot)
export(mirna2mrna)
export(nuccoreLinks)
export(outputRomer)
export(plotDeg)
export(plotHist)
export(plotPCA)
export(runRomer)
export(vennCounts2)
export(vennInLine)
export(vennPage)
export(vennSelect2)
export(writeFit)
exportMethods(annotateEset)
exportMethods(makeVenn)
exportMethods(plotPCA)
exportMethods(runRomer)
import(DBI)
import(RSQLite)
import(methods)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,addVigs2WinMenu)
importFrom(Biobase,assayDataElement)
importFrom(Biobase,featureData)
importFrom(BiocGenerics,plotPCA)
importFrom(GOstats,probeSetSummary)
importFrom(Glimma,glMDPlot)
importFrom(ReportingTools,CSVFile)
importFrom(ReportingTools,HTMLReport)
importFrom(ReportingTools,filename)
importFrom(ReportingTools,finish)
importFrom(ReportingTools,path)
importFrom(ReportingTools,publish)
importFrom(ReportingTools,reporting.theme)
importFrom(S4Vectors,DataFrame)
importFrom(affy,AffyRNAdeg)
importFrom(affy,ReadAffy)
importFrom(affy,mas5)
importFrom(affy,plotAffyRNAdeg)
importFrom(affy,plotDensity)
importFrom(affy,rma)
importFrom(edgeR,cpm)
importFrom(edgeR,glmLRT)
importFrom(edgeR,glmQLFTest)
importFrom(edgeR,glmTreat)
importFrom(edgeR,topTags)
importFrom(gcrma,gcrma)
importFrom(ggplot2,"%+replace%")
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(gplots,bluered)
importFrom(gplots,heatmap.2)
importFrom(gplots,plot.venn)
importFrom(gplots,venn)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(grDevices,rainbow)
importFrom(grDevices,recordPlot)
importFrom(grDevices,replayPlot)
importFrom(graphics,axis)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(grid,grid.newpage)
importFrom(grid,pushViewport)
importFrom(grid,unit)
importFrom(grid,upViewport)
importFrom(grid,viewport)
importFrom(hwriter,closePage)
importFrom(hwriter,hmakeTag)
importFrom(hwriter,hwrite)
importFrom(hwriter,hwriteImage)
importFrom(hwriter,openPage)
importFrom(lattice,bwplot)
importFrom(lattice,dotplot)
importFrom(lattice,lattice.options)
importFrom(lattice,panel.abline)
importFrom(lattice,panel.dotplot)
importFrom(lattice,panel.xyplot)
importFrom(lattice,trellis.par.get)
importFrom(lattice,xyplot)
importFrom(limma,decideTests)
importFrom(limma,ids2indices)
importFrom(limma,romer)
importFrom(limma,topTable)
importFrom(limma,vennCounts)
importFrom(limma,vennDiagram)
importFrom(oligoClasses,db)
importFrom(splines,ns)
importFrom(stats,cor)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(utils,read.table)
importFrom(utils,write.table)
importFrom(xtable,xtable)
importMethodsFrom(AnnotationDbi,Term)
importMethodsFrom(AnnotationDbi,dbconn)
importMethodsFrom(AnnotationDbi,get)
importMethodsFrom(AnnotationDbi,mapIds)
importMethodsFrom(AnnotationDbi,select)
importMethodsFrom(Biobase,"featureData<-")
importMethodsFrom(Biobase,AnnotatedDataFrame)
importMethodsFrom(Biobase,annotation)
importMethodsFrom(Biobase,exprs)
importMethodsFrom(Biobase,featureNames)
importMethodsFrom(Biobase,pData)
importMethodsFrom(Biobase,sampleNames)
importMethodsFrom(Biobase,write.exprs)
importMethodsFrom(affy,hist)
importMethodsFrom(affy,mas5calls)
