Config file:         full/path/to/config/file/that/has/been/used.csv
Average Quality:     30
Minimum Quality:     0
Filter N-reads:      FALSE
Batch size:          1e+07
Write Alignments:    None
Fastq files Mode:    0
Gap Opening:         25
Gap Extension:       0
Consensus:           TRUE
Normalize:           guideRNA, Group
PRIMER DIMER buffer: 30
Cut buffer: 5
Scoring Matrix:
,A,C,G,T,M,R,W,S,Y,K,V,H,D,B,N
A,5,-4,-4,-4,0.5,0.5,0.5,-4,-4,-4,-1,-1,-1,-4,-1.75
C,-4,5,-4,-4,0.5,-4,-4,0.5,0.5,-4,-1,-1,-4,-1,-1.75
G,-4,-4,5,-4,-4,0.5,-4,0.5,-4,0.5,-1,-4,-1,-1,-1.75
T,-4,-4,-4,5,-4,-4,0.5,-4,0.5,0.5,-4,-1,-1,-1,-1.75
M,0.5,0.5,-4,-4,0.5,-1.75,-1.75,-1.75,-1.75,-4,-1,-1,-2.5,-2.5,-1.75
R,0.5,-4,0.5,-4,-1.75,0.5,-1.75,-1.75,-4,-1.75,-1,-2.5,-1,-2.5,-1.75
W,0.5,-4,-4,0.5,-1.75,-1.75,0.5,-4,-1.75,-1.75,-2.5,-1,-1,-2.5,-1.75
S,-4,0.5,0.5,-4,-1.75,-1.75,-4,0.5,-1.75,-1.75,-1,-2.5,-2.5,-1,-1.75
Y,-4,0.5,-4,0.5,-1.75,-4,-1.75,-1.75,0.5,-1.75,-2.5,-1,-2.5,-1,-1.75
K,-4,-4,0.5,0.5,-4,-1.75,-1.75,-1.75,-1.75,0.5,-2.5,-2.5,-1,-1,-1.75
V,-1,-1,-1,-4,-1,-1,-2.5,-1,-2.5,-2.5,-1,-2,-2,-2,-1.75
H,-1,-1,-4,-1,-1,-2.5,-1,-2.5,-1,-2.5,-2,-1,-2,-2,-1.75
D,-1,-4,-1,-1,-2.5,-1,-1,-2.5,-2.5,-1,-2,-2,-1,-2,-1.75
B,-4,-1,-1,-1,-2.5,-2.5,-2.5,-1,-1,-1,-2,-2,-2,-1,-1.75
N,-1.75,-1.75,-1.75,-1.75,-1.75,-1.75,-1.75,-1.75,-1.75,-1.75,-1.75,-1.75,-1.75,-1.75,-1.75
