# Generated by roxygen2: do not edit by hand

S3method(as.SVTable,GEVAGroupSet)
S3method(as.SVTable,GEVAQuantiles)
S3method(as.SVTable,SVTable)
S3method(as.SVTable,data.frame)
S3method(as.SVTable,matrix)
S3method(as.array,GEVAInput)
S3method(as.character,SVAttribute)
S3method(as.data.frame,GEVAGroupSet)
S3method(as.data.frame,SVTable)
S3method(as.expression,GEVAGroupSet)
S3method(as.expression,GEVAGroupedSummary)
S3method(as.expression,GEVAQuantiles)
S3method(as.expression,GEVAResults)
S3method(as.expression,GEVASummary)
S3method(as.list,TypedList)
S3method(as.matrix,GEVAGroupedSummary)
S3method(as.matrix,GEVASummary)
S3method(as.matrix,SVTable)
S3method(as.typed.list,TypedList)
S3method(as.typed.list,list)
S3method(as.typed.list,vector)
S3method(as.vector,SVAttribute)
S3method(color.values,GEVAGroupSet)
S3method(format,SVTable)
S3method(get.summary.method,GEVASummary)
S3method(get.variation.method,GEVASummary)
S3method(head,GEVAInput)
S3method(head,GEVAResults)
S3method(head,SVTable)
S3method(is.na,SVTable)
S3method(levels,GEVAGroupSet)
S3method(levels,GEVAInput)
S3method(levels,GEVAResults)
S3method(lines,GEVACluster)
S3method(lines,GEVAGroupedSummary)
S3method(lines,GEVAQuantiles)
S3method(points,GEVAGroupSet)
S3method(points,GEVAGroupedSummary)
S3method(points,GEVAResults)
S3method(points,SVTable)
S3method(summary,SVAttribute)
S3method(summary,SVTable)
S3method(tail,GEVAInput)
S3method(tail,SVTable)
S3method(variation,SVAttribute)
S3method(variation,SVTable)
S3method(with,SVTable)
export(as.SVTable)
export(get.distance.method)
export(get.summary.method)
export(get.variation.method)
export(geva.cluster)
export(geva.dcluster)
export(geva.finalize)
export(geva.hcluster)
export(geva.ideal.example)
export(geva.input.correct)
export(geva.input.filter)
export(geva.input.rename.rows)
export(geva.merge.input)
export(geva.quantiles)
export(geva.quick)
export(geva.read.tables)
export(geva.summarize)
export(options.cl.score.method)
export(options.cluster.method)
export(options.dcluster.method)
export(options.distance)
export(options.factoring.p.adjust)
export(options.hc.method)
export(options.hc.metric)
export(options.quantiles)
export(options.summary)
export(options.variation)
export(svtable)
export(top.genes)
export(typed.list)
export(variation)
exportClasses(GEVACluster)
exportClasses(GEVAGroupSet)
exportClasses(GEVAGroupedSummary)
exportClasses(GEVAInput)
exportClasses(GEVAQuantiles)
exportClasses(GEVAQuantilesAdjusted)
exportClasses(GEVAResults)
exportClasses(GEVASummary)
exportClasses(SVAttribute)
exportClasses(SVChrAttribute)
exportClasses(SVIntAttribute)
exportClasses(SVNumAttribute)
exportClasses(SVTable)
exportClasses(TypedList)
exportMethods("$")
exportMethods("[")
exportMethods("[<-")
exportMethods("classification.table<-")
exportMethods("dimnames<-")
exportMethods("elem.class<-")
exportMethods("factors<-")
exportMethods("featureTable<-")
exportMethods("groupsets<-")
exportMethods("infolist<-")
exportMethods(analysis.params)
exportMethods(centroids)
exportMethods(classification.table)
exportMethods(cluster.method)
exportMethods(dim)
exportMethods(dimnames)
exportMethods(elem.class)
exportMethods(factors)
exportMethods(featureTable)
exportMethods(group.rels)
exportMethods(groups)
exportMethods(groupsets)
exportMethods(infolist)
exportMethods(inputdata)
exportMethods(inputnames)
exportMethods(inputvalues)
exportMethods(inputweights)
exportMethods(length)
exportMethods(names)
exportMethods(offsets)
exportMethods(plot)
exportMethods(qareasizes)
exportMethods(qcount)
exportMethods(qindexes)
exportMethods(quantiles)
exportMethods(quantiles.method)
exportMethods(results.table)
exportMethods(scores)
exportMethods(show)
exportMethods(sv)
exportMethods(sv.data)
exportMethods(sv.scores)
exportMethods(svattr)
if(isNamespaceLoaded('roxygen2'))
{
    importFrom(roxygen2,roxy_tag_parse)
    importFrom(roxygen2,roxy_tag_rd)
    S3method(format,rd_section_methods)
    S3method(merge,rd_section_methods)
    S3method(roxy_tag_parse,roxy_tag_category)
    S3method(roxy_tag_parse,roxy_tag_declareS4class)
    S3method(roxy_tag_parse,roxy_tag_methodsnote)
    S3method(roxy_tag_parse,roxy_tag_options)
    S3method(roxy_tag_parse,roxy_tag_s3method)
    S3method(roxy_tag_parse,roxy_tag_s3methodDescription)
    S3method(roxy_tag_parse,roxy_tag_s4accessor)
    S3method(roxy_tag_parse,roxy_tag_s4method)
    S3method(roxy_tag_parse,roxy_tag_s4methodDescription)
    S3method(roxy_tag_rd,roxy_tag_methodsnote)
    S3method(roxy_tag_rd,roxy_tag_s3methodDescription)
    S3method(roxy_tag_rd,roxy_tag_s4accessor)
    S3method(roxy_tag_rd,roxy_tag_s4methodDescription)
}
importFrom(fastcluster,hclust.vector)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,chull)
importFrom(grDevices,hsv)
importFrom(graphics,abline)
importFrom(graphics,lines)
importFrom(graphics,plot.default)
importFrom(graphics,points)
importFrom(graphics,points.default)
importFrom(graphics,polygon)
importFrom(matrixStats,rowAnys)
importFrom(matrixStats,weightedMad)
importFrom(matrixStats,weightedMean)
importFrom(matrixStats,weightedMedian)
importFrom(matrixStats,weightedSd)
importFrom(matrixStats,weightedVar)
importFrom(methods,callNextMethod)
importFrom(methods,extends)
importFrom(methods,findMethodSignatures)
importFrom(methods,formalArgs)
importFrom(methods,getAllSuperClasses)
importFrom(methods,getClassDef)
importFrom(methods,getMethod)
importFrom(methods,getSlots)
importFrom(methods,hasMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(methods,validObject)
importFrom(stats,cutree)
importFrom(stats,lm.fit)
importFrom(stats,lm.wfit)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.exclude)
importFrom(stats,na.omit)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(utils,.S3methods)
importFrom(utils,head)
importFrom(utils,isS3method)
importFrom(utils,read.delim)
importFrom(utils,tail)
