Sarks                   Suffix Array Kernel Smoothing
blockInfo               Get sarks smoothed scores for input sequence
blockScores             SArKS input scores
clusterCounts           Count occurrences of k-mer clusters
clusterKmers            Cluster k-mers
estimateFalsePositiveRate
                        Estimating SArKS false positive rate
extendKmers             Extend k-mers in length where possible
kmerCounts              Count occurrences of k-mer
kmerPeaks               Call k-mer peaks
locateClusters          Locate occurrences of specified clusters of
                        k-mers
locateKmers             Locate occurrences of specified k-mers
mergedKmerSubPeaks      Identify and merge k-mer sub-peaks within
                        multi-motif domains
permutationDistribution
                        Estimating distribution of maximum smoothed
                        sequence scores under permutation
permutationThresholds   Set smoothed score thresholds based on
                        permutation distribution
pruneIntervals          Prune nested k-mer intervals from called k-mer
                        peak set.
regexCounts             Count occurrences of regular expression
regexLocate             Locate occurrences of regular expression
sarksFilters            Smoothing window and Gini impurity filter
                        settings
simulatedScores         Scores associated with simulated sequences from
                        SArKS paper.
simulatedSeqs           Simulated sequences from SArKS paper.
sourceBlock             Identify associated input sequence for given
                        position(s) in suffix array
