seqPattern-package	seqPattern-package
getPatternOccurrenceList	getPatternOccurrenceList
getPatternOccurrenceList,DNAStringSet-method	getPatternOccurrenceList
motifScanHits	motifScanHits
motifScanHits,DNAStringSet,matrix-method	motifScanHits
motifScanScores	motifScanScores
motifScanScores,DNAStringSet,matrix-method	motifScanScores
plotMotifDensityMap	plotMotifDensityMap
plotMotifDensityMap,DNAStringSet,matrix-method	plotMotifDensityMap
plotMotifOccurrenceAverage	plotMotifOccurrenceAverage
plotMotifOccurrenceAverage,DNAStringSet,matrix-method	plotMotifOccurrenceAverage
plotMotifScanScores	plotMotifScanScores
plotMotifScanScores,DNAStringSet,matrix-method	plotMotifScanScores
plotPatternDensityMap	plotPatternDensityMap
plotPatternDensityMap,DNAStringSet-method	plotPatternDensityMap
plotPatternOccurrenceAverage	plotPatternOccurrenceAverage
plotPatternOccurrenceAverage,DNAStringSet-method	plotPatternOccurrenceAverage
seqPattern	seqPattern-package
TBPpwm	TBPpwm
zebrafishPromoters	zebrafisPromoters
zebrafishPromoters24h	zebrafisPromoters24h
