Package: vulcan
Type: Package
Title: VirtUaL ChIP-Seq data Analysis using Networks
Version: 1.32.0
Author: Federico M. Giorgi, Andrew N. Holding, Florian Markowetz
Maintainer: Federico M. Giorgi <federico.giorgi@gmail.com>
Description: Vulcan (VirtUaL ChIP-Seq Analysis through Networks) is a
        package that interrogates gene regulatory networks to infer
        cofactors significantly enriched in a differential binding
        signature coming from ChIP-Seq data. In order to do so, our
        package combines strategies from different BioConductor
        packages: DESeq for data normalization, ChIPpeakAnno and
        DiffBind for annotation and definition of ChIP-Seq genomic
        peaks, csaw to define optimal peak width and viper for applying
        a regulatory network over a differential binding signature.
License: LGPL-3
biocViews: SystemsBiology, NetworkEnrichment, GeneExpression, ChIPSeq
NeedsCompilation: no
Suggests: vulcandata
Depends: R (>= 4.0), ChIPpeakAnno,TxDb.Hsapiens.UCSC.hg19.knownGene,
        zoo, GenomicRanges, S4Vectors, viper, DiffBind, locfit
Imports: wordcloud, csaw, gplots, stats, utils, caTools, graphics,
        DESeq2, Biobase
Encoding: UTF-8
RoxygenNote: 7.1.1
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:41:08 UTC
RemoteUrl: https://github.com/bioc/vulcan
RemoteRef: RELEASE_3_22
RemoteSha: 55315e7e0526b753990cdf7d892ba684a08d87c4
Packaged: 2025-11-11 18:27:01 UTC; root
Built: R 4.5.2; ; 2025-11-11 18:33:41 UTC; windows
