aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Bioconductor version: Release (3.20)
Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.
Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [ctb], Aaron Lun [ctb]
Maintainer: Henrik Bengtsson <henrikb at braju.com>
Citation (from within R, enter
citation("aroma.light")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("aroma.light")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Infrastructure, Microarray, MultiChannel, OneChannel, Preprocessing, Software, TwoChannel, Visualization |
| Version | 3.36.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (18 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15.2) |
| Imports | stats, R.methodsS3 (>= 1.7.1), R.oo (>= 1.23.0), R.utils (>= 2.9.0), matrixStats (>= 0.55.0) |
| System Requirements | |
| URL | https://github.com/HenrikBengtsson/aroma.light https://www.aroma-project.org |
| Bug Reports | https://github.com/HenrikBengtsson/aroma.light/issues |
See More
| Suggests | princurve (>= 2.1.4) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | EDASeq, scone, PSCBS |
| Suggests Me | TIN, aroma.affymetrix, aroma.cn, aroma.core |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | aroma.light_3.36.0.tar.gz |
| Windows Binary (x86_64) | aroma.light_3.36.0.zip |
| macOS Binary (x86_64) | aroma.light_3.36.0.tgz |
| macOS Binary (arm64) | aroma.light_3.35.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/aroma.light |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/aroma.light |
| Bioc Package Browser | https://code.bioconductor.org/browse/aroma.light/ |
| Package Short Url | https://bioconductor.org/packages/aroma.light/ |
| Package Downloads Report | Download Stats |