R/read.gatingML.cytobank.R
read.gatingML.cytobank.Rd
The Default parser (read.gatingML) does not parse the population tree as well as the custom information from cytobank. (e.g. gate name, fcs filename).
read.gatingML.cytobank(file, ...)
file | Gating-ML XML file |
---|---|
... | additional arguments passed to the handlers of 'xmlTreeParse' |
a graphGML that represents the population tree. The gate and population name are stored in nodeData of each node. Compensation and transformations are stored in graphData.
if (FALSE) { g <- read.gatingML.cytobank(xml) #parse the population tree #plot(g) #visualize it }