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URL:  https://git.bioconductor.org/packages/GSABenchmark
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 24.04.3 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: GSABenchmark
Version: 0.99.2
RVersion: 4.6
BiocVersion: 3.23
BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSABenchmark
BuildTime: 3 minutes 25.33 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: GSABenchmark_20260304042504
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: GSABenchmark. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file GSABenchmark/DESCRIPTION ... OK
* preparing GSABenchmark:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building GSABenchmark.Rmd using rmarkdown

Quitting from GSABenchmark.Rmd:280-283 [unnamed-chunk-24]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `cmdscale()`:
! 'k' must be in {1, 2, ..  n - 1}
---
Backtrace:
    
 1. GSABenchmark::mdsPlots(scObj, smr)
 2.   GSABenchmark:::plotList(...)
 3.     base::do.call(calcFun, args)
 4.     GSABenchmark (local) `<fn>`(`<SnglCllE[,8569]>`, `<named list>`)
 5.       base::lapply(...)
 6.         GSABenchmark (local) FUN(X[[i]], ...)
 7.           base::as.data.frame(cmdscale(distMat))
 8.           stats::cmdscale(distMat)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GSABenchmark.Rmd' failed with diagnostics:
'k' must be in {1, 2, ..  n - 1}
--- failed re-building GSABenchmark.Rmd

SUMMARY: processing the following file failed:
  GSABenchmark.Rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output
 
                    			
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