Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/MeLSI

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	OK	ERROR	skipped	OK

nebbiolo1 Summary

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Package: MeLSI

Version: 0.99.6

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MeLSI

BuildTime: 0 minutes 59.43 seconds

CheckCommand: BiocCheckGitClone('MeLSI') && /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --no-vignettes --timings --library=/home/pkgbuild/packagebuilder/workers/jobs/4062/R-libs --install=check:/home/pkgbuild/packagebuilder/workers/jobs/4062/839a536e02d5aada8f75fa6e9410daabc958a07b/MeLSI.install-out.txt MeLSI_0.99.6.tar.gz && BiocCheck('MeLSI_0.99.6.tar.gz', `new-package`=TRUE)

CheckTime: 0 minutes 7.81 seconds

BuildBinCommand:

BuildBinTime:

PackageFileSize: 316.24 KiB

BuildID:: MeLSI_20260223201135

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: MeLSI. Starting Build package. Starting Check package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Adding Build Product Information to Database.Checking Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

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* checking for file MeLSI/DESCRIPTION ... OK
* preparing MeLSI:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building MeLSI_0.99.6.tar.gz

nebbiolo1 CHECK output

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===============================

 BiocCheckGitClone('MeLSI')

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 sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/4062/839a536e02d5aada8f75fa6e9410daabc958a07b/MeLSI
 BiocVersion: 3.23
 Package: MeLSI
 PackageVersion: 0.99.6
 BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/4062/839a536e02d5aada8f75fa6e9410daabc958a07b/MeLSI.BiocCheck
 BiocCheckVersion: 1.47.18
 sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/4062/839a536e02d5aada8f75fa6e9410daabc958a07b/MeLSI
 installDir: NULL
 isTarBall: FALSE
 platform: unix
* Checking valid files...
* Checking individual file sizes...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking if DESCRIPTION is well formatted...
* Checking NAMESPACE...
* Checking for valid maintainer...
* Checking CITATION...
* Checking that provided CITATION file is correctly formatted...
 BiocCheck v1.47.18 results 
 0 ERRORS |  0 WARNINGS | i 0 NOTES
i For more details, run
  browseVignettes(package = 'BiocCheck')




===============================

 R CMD CHECK

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* using log directory /home/pkgbuild/packagebuilder/workers/jobs/4062/839a536e02d5aada8f75fa6e9410daabc958a07b/MeLSI.Rcheck
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using option --no-vignettes
* checking for file MeLSI/DESCRIPTION ... OK
* checking extension type ... Package
* this is package MeLSI version 0.99.6
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package MeLSI can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking build directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] ERROR
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for MeLSI in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
 there is no package called BiocGenerics
Execution halted
* DONE

Status: 1 ERROR
See
  /home/pkgbuild/packagebuilder/workers/jobs/4062/839a536e02d5aada8f75fa6e9410daabc958a07b/MeLSI.Rcheck/00check.log
for details.





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 BiocCheck('MeLSI_0.99.6.tar.gz')

===============================

Error: package or namespace load failed for BiocCheck in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called BiocGenerics
Execution halted

nebbiolo1 BUILD BIN output

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