SKAT: SNP-Set (Sequence) Kernel Association Test

Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.

Version:	2.2.5
Depends:	R (≥ 2.13.0), Matrix, SPAtest, RSpectra
Published:	2023-01-15
DOI:	10.32614/CRAN.package.SKAT
Author:	Seunggeun (Shawn) Lee and Zhangchen Zhao, with contributions from Larisa Miropolsky and Michael Wu
Maintainer:	Seunggeun (Shawn) Lee <lee7801 at snu.ac.kr>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:	yes
CRAN checks:	SKAT results

Documentation:

Reference manual:	SKAT.html , SKAT.pdf
Vignettes:	SKAT (source, R code)

Downloads:

Package source:	SKAT_2.2.5.tar.gz
Windows binaries:	r-devel: SKAT_2.2.5.zip, r-release: SKAT_2.2.5.zip, r-oldrel: SKAT_2.2.5.zip
macOS binaries:	r-release (arm64): SKAT_2.2.5.tgz, r-oldrel (arm64): SKAT_2.2.5.tgz, r-release (x86_64): SKAT_2.2.5.tgz, r-oldrel (x86_64): SKAT_2.2.5.tgz
Old sources:	SKAT archive

Reverse dependencies:

Reverse depends:	FSTpackage, GenoScan, LGEWIS, LGRF, WGScan, ZIM4rv
Reverse imports:	AllelicSeries, GBJ, MetaSKAT, SAIGEgds, SMUT, zfa
Reverse suggests:	BGData, bigQF, FastKM, GRAB, seqminer

Linking:

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