TBRDist: Rearrangement Distances Between Unrooted Phylogenetic Trees

Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) <doi:10.48550/arXiv.1511.07529>.

Version:	1.0.2
Depends:	R (≥ 3.4.0)
Imports:	ape, Rdpack, TreeDist, TreeTools (≥ 1.1.0)
LinkingTo:	BH, Rcpp
Suggests:	knitr, rmarkdown, testthat
Published:	2020-09-17
DOI:	10.32614/CRAN.package.TBRDist
Author:	Martin R. Smith [aut, cre, cph], Chris Whidden [cph]
Maintainer:	Martin R. Smith <martin.smith at durham.ac.uk>
BugReports:	https://github.com/ms609/TBRDist/issues/
License:	GPL (≥ 3)
Copyright:	Underlying C++ code copyright 2018 Chris Whidden.
URL:	https://ms609.github.io/TBRDist/, https://github.com/ms609/TBRDist/, https://github.com/cwhidden/uspr/
NeedsCompilation:	yes
SystemRequirements:	C++11
Language:	en-GB
Citation:	TBRDist citation info
Materials:	NEWS
In views:	Phylogenetics
CRAN checks:	TBRDist results

Documentation:

Reference manual:	TBRDist.html , TBRDist.pdf
Vignettes:	Using TBRDist (source, R code)

Downloads:

Package source:	TBRDist_1.0.2.tar.gz
Windows binaries:	r-devel: TBRDist_1.0.2.zip, r-release: TBRDist_1.0.2.zip, r-oldrel: TBRDist_1.0.2.zip
macOS binaries:	r-release (arm64): TBRDist_1.0.2.tgz, r-oldrel (arm64): TBRDist_1.0.2.tgz, r-release (x86_64): TBRDist_1.0.2.tgz, r-oldrel (x86_64): TBRDist_1.0.2.tgz
Old sources:	TBRDist archive

Linking:

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