Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.
| Version: | 1.0.0 |
| Imports: | ggplot2, stringr, utils |
| Suggests: | knitr, rmarkdown |
| Published: | 2023-10-03 |
| DOI: | 10.32614/CRAN.package.syntenyPlotteR |
| Author: | Marta Farre [aut, cre, cph], Sarah Quigley [aut], Joana Damas [aut], Denis Larkin [aut] |
| Maintainer: | Marta Farre <m.farre-belmonte at kent.ac.uk> |
| BugReports: | https://github.com/Farre-lab/syntenyPlotteR/issues |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Citation: | syntenyPlotteR citation info |
| Materials: | README, NEWS |
| CRAN checks: | syntenyPlotteR results |
| Reference manual: | syntenyPlotteR.html , syntenyPlotteR.pdf |
| Vignettes: |
SyntenyPlotteR - a tool for genome synteny visualisation (source, R code) |
| Package source: | syntenyPlotteR_1.0.0.tar.gz |
| Windows binaries: | r-devel: syntenyPlotteR_1.0.0.zip, r-release: syntenyPlotteR_1.0.0.zip, r-oldrel: syntenyPlotteR_1.0.0.zip |
| macOS binaries: | r-release (arm64): syntenyPlotteR_1.0.0.tgz, r-oldrel (arm64): syntenyPlotteR_1.0.0.tgz, r-release (x86_64): syntenyPlotteR_1.0.0.tgz, r-oldrel (x86_64): syntenyPlotteR_1.0.0.tgz |
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