Class RnaIOContext
File context for sharing information between RnaRecord and RnaHeader.

Defined in <seqan/rna_io.h>
Signature class RnaIOCOntext;

Member Variable Overview

Detailed Description

As the labels and identifiers defined in the header are needed for parsing the record data, this container stores all the shared information.

Member Variables Detail

StringSet<CharString> RnaIOContext::bppIdent

Identifiers for the base pair probability structure graphs (starting with M).

StringSet<CharString> RnaIOContext::bppLabels

Descriptions for the base pair probability structure graphs (value of M.. field).

StringSet<CharString> RnaIOContext::fixIdent

Identifiers for the fixed structure graphs (starting with F).

StringSet<CharString> RnaIOContext::fixLabels

Descriptions for the fixed structure graphs (value of F.. field).

StringSet<CharString> RnaIOContext::seqIdent

Identifiers for the sequences (starting with S).

StringSet<CharString> RnaIOContext::seqLabels

Descriptions for the sequences (value of S.. field).

StringSet<CharString> RnaIOContext::typIdent

Identifiers for the types of biological data.