Package	Download_score
Biobase	46665
affy	8440
CSAR	77
flowCore	2833
IRanges	50187
BSgenome	13318
RankProd	289
illuminaio	2906
Rolexa	8
sva	7014
GenomeGraphs	18
genefilter	12970
BufferedMatrixMethods	56
CMA	111
BHC	85
RNAither	16
MSstats	502
ccrepe	86
ChAMP	567
GEOmetadb	228
snpStats	2255
cosmo	3
ensemblVEP	163
QuasR	358
topGO	3031
ontoCAT	11
anota	82
weaver	59
iSeq	50
limmaGUI	69
KCsmart	61
MotifDb	645
frmaTools	70
triplex	53
MEDME	52
MVCClass	88
clstutils	58
cycle	58
DECIPHER	2738
CoCiteStats	51
BeadDataPackR	673
BiocParallel	41658
AgiMicroRna	134
sigPathway	30
PAPi	17
pgUtils	3
fabia	176
AffyCompatible	25
cisPath	54
BufferedMatrix	89
lpNet	61
ArrayTV	15
flagme	56
jmosaics	7
genomeIntervals	178
omicade4	136
VariantTools	164
ENVISIONQuery	13
Ringo	374
MiChip	50
OmicCircos	185
biocViews	4225
prebs	71
CAGEr	113
TFBSTools	3120
nucleR	77
ProCoNA	12
gmapR	163
GRENITS	53
flowMeans	158
SJava	5
SNAGEE	53
ADaCGH2	71
AffyExpress	13
cnvGSA	61
GeneSelectMMD	102
deepSNV	160
ReactomePA	2327
TDARACNE	16
ASSET	103
geneRecommender	52
hyperdraw	110
BicARE	134
rsbml	149
IsoGeneGUI	15
GeneRfold	2
seqCNA	56
mitoODE	12
BiocCaseStudies	15
Roleswitch	13
ampliQueso	11
GeneticsBase	3
hexbin	18
gene2pathway	3
asmn	3
mmnet	9
metaMS	101
TitanCNA	77
flowCL	19
Seqnames	0
pairseqsim	2
kebabs	141
GenomicInteractions	344
netbiov	31
methylPipe	120
geecc	7
genomation	624
tracktables	118
Rqc	264
metabomxtr	51
miRNAtap	143
SNPRelate	1620
compEpiTools	67
GenoView	2
CoRegNet	50
RUVnormalize	64
MBASED	57
GSReg	59
rRDP	62
affydata	1
gff3Plotter	2
arrayQCplot	2
TRONCO	68
AnnotationForge	2514
BioNet	274
ChemmineR	908
CNORdt	63
GenomicFeatures	19697
Rgraphviz	9857
Gviz	3896
AnnotationDbi	36390
annaffy	270
preprocessCore	14040
keggorthology	139
TargetSearch	66
chimera	18
Mfuzz	1138
iClusterPlus	326
girafe	91
piano	471
ChIPpeakAnno	981
ecolitk	56
ExiMiR	55
DEXSeq	1477
flowUtils	42
wateRmelon	734
CGEN	61
EBImage	2665
les	91
MLP	121
coRNAi	11
Rbowtie	509
synapter	89
made4	235
goseq	1212
ReQON	49
BrainStars	14
BioMVCClass	55
proteinProfiles	48
RTCA	56
EDASeq	1775
ChemmineOB	337
ssize	86
ChromHeatMap	123
cn.mops	269
metaSeq	64
MLInterfaces	379
MMDiff	8
networkBMA	15
NormqPCR	175
flowTrans	80
BiGGR	65
ReportingTools	719
GOFunction	14
affyQCReport	19
GSVA	5783
HilbertVisGUI	36
ddgraph	10
deltaGseg	51
DFP	51
clonotypeR	19
daMA	54
LVSmiRNA	14
affycomp	92
CoGAPS	244
motifStack	718
rBiopaxParser	168
PSICQUIC	22
fastseg	742
MIMOSA	34
GeneticsPed	98
affypdnn	14
Resourcerer	5
mdqc	98
spade	11
PANR	54
genomes	62
roar	56
GLAD	230
TurboNorm	58
RIPSeeker	24
flowType	15
DOSE	16734
timecourse	68
procoil	57
tilingArray	141
epigenomix	57
ITALICS	57
GlobalAncova	984
CNAnorm	61
BCRANK	67
exomePeak	19
spikeLI	44
SwimR	11
Agi4x44PreProcess	4
UniProt.ws	420
MSnbase	3171
clusterProfiler	17113
tRanslatome	119
lol	10
snpMatrix	9
antiProfiles	58
CNORfuzzy	64
PWMEnrich	157
cleanUpdTSeq	102
mBPCR	57
xmapcore	3
Clomial	51
COHCAP	62
exonmap	3
CNEr	3136
Sushi	65
DMRforPairs	34
unifiedWMWqPCR	56
MLSeq	155
hiAnnotator	105
GSCA	57
GeneOverlap	404
edd	3
ssviz	57
GSAR	86
ontoTools	2
CFAssay	48
mygene	344
polyester	120
OncoSimulR	60
regionReport	118
mdgsa	9
pepStat	49
EnrichmentBrowser	553
FEM	23
interactiveDisplayBase	10267
Rnits	48
proBAMr	51
PAA	65
GOexpress	85
ASGSCA	54
SGSeq	307
gQTLstats	10
bioDist	254
annotate	18096
limma	31314
ctc	280
Rsamtools	22771
DESeq	203
PROcess	90
macat	58
OLINgui	53
Repitools	328
rqubic	79
TSSi	13
gcrma	1393
pdInfoBuilder	110
BiSeq	142
widgetTools	1249
CNVtools	12
Category	1928
minfi	2315
affycoretools	393
BayesPeak	16
Icens	439
RWebServices	4
CNTools	129
seqLogo	3466
ARRmNormalization	54
paircompviz	57
isobar	79
ReadqPCR	203
SplicingGraphs	89
snm	165
altcdfenvs	110
bumphunter	2694
BitSeq	23
Rdisop	459
GOSim	127
easyRNASeq	177
logicFS	83
pkgDepTools	23
triform	15
vbmp	70
Vega	11
spkTools	50
STRINGdb	1109
genoset	22
biocGraph	162
hypergraph	155
sagenhaft	50
cobindR	13
RDAVIDWebService	34
cghMCR	65
flowMap	47
arrayQuality	94
PCpheno	14
aCGH	210
RDRToolbox	120
HELP	55
RbcBook1	75
rama	18
BaseSpaceR	60
eiR	63
HTSanalyzeR	16
mgsa	106
PING	69
flowPhyto	5
spliceSites	14
AnnotationFuncs	17
NTW	49
iterativeBMA	55
dks	47
ExpressionView	15
customProDB	80
birta	16
SIM	54
a4Base	136
SeqVarTools	444
IPPD	13
BioSeqClass	16
SimBindProfiles	58
CGHbase	443
plgem	109
qcmetrics	89
HTSFilter	224
msmsTests	259
cosmoGUI	3
OLIN	89
spotSegmentation	12
codelink	71
rfPred	59
GeneGroupAnalysis	3
Ruuid	4
messina	53
RefNet	13
VariantFiltering	87
COMPASS	72
Rcpi	118
CoverageView	64
biocDatasets	2
RMAGEML	3
groHMM	65
Pviz	78
derfinder	580
exonfindR	0
GenomicTuples	47
FourCSeq	11
MSGFplus	13
quantro	343
paxtoolsr	84
csaw	585
MSnID	238
derfinderHelper	577
oposSOM	72
riboSeq	0
nethet	49
ShortRead	6222
clst	90
crlmm	239
minet	760
zlibbioc	49564
biovizBase	5495
SeqGSEA	132
flowViz	1053
LPE	85
OCplus	80
pcot2	14
xps	15
splicegear	13
beadarray	713
phyloseq	5343
HTqPCR	169
MassArray	50
tigre	59
GGBase	17
globaltest	1716
spliceR	15
GeneMeta	97
DESeq2	21183
ArrayExpress	421
ChIPXpress	97
pvac	50
mzR	3319
GWASTools	604
r3Cseq	87
RNASeqPower	141
ggbio	2143
quantsmooth	629
trio	95
metahdep	56
NetSAM	59
mzID	3022
twilight	109
MassSpecWavelet	1814
HEM	51
geNetClassifier	146
DynDoc	1246
iBMQ	46
IdMappingRetrieval	13
segmentSeq	55
SBMLR	64
genefu	419
CORREP	55
CorMut	13
CSSP	33
plrs	13
pcaMethods	5077
joda	13
prada	20
beadarraySNP	57
gaia	28
flowBeads	59
TypeInfo	48
SAGx	17
eisa	14
GeneRegionScan	60
h5vc	78
GEOsubmission	54
RTopper	54
RchyOptimyx	14
pathifier	123
pcaGoPromoter	14
imageHTS	23
a4	83
iPAC	126
multiscan	51
bgafun	13
puma	99
iChip	51
ChIPseqR	84
copa	55
ChIPsim	86
MiPP	52
domainsignatures	11
fdrame	50
DirichletMultinomial	4408
SeqArray	896
flowFlowJo	6
SamSPECTRAL	148
graphite	2927
gCMAPWeb	13
NCIgraph	114
ACME	81
bioassayR	71
idiogram	56
maanova	21
ArrayExpressHTS	17
rbsurv	60
PADOG	238
REDseq	83
PLPE	53
miRNApath	62
DeconRNASeq	213
qrqc	26
pickgene	49
webbioc	62
DriverNet	55
trackViewer	478
scsR	13
BEAT	58
PECA	60
Rdbi	3
viper	711
CAFE	70
rpx	246
INPower	53
BiocCheck	1608
CRISPRseek	158
Rariant	14
HDTD	46
simulatorAPMS	3
monocle	3010
pamr	5
DEGreport	572
rflowcyt	3
fbat	3
FlowSOM	1075
switchBox	121
ALDEx2	1171
missMethyl	972
facopy	5
PSEA	47
COSNet	52
shinyMethyl	102
STATegRa	56
flowCHIC	57
IMPCdata	46
pxr	0
PROPER	82
BUS	56
CGHregions	77
RBGL	9455
biomaRt	23963
OrganismDbi	3246
sizepower	59
qvalue	16667
waveTiling	15
SRAdb	377
SPIA	635
multtest	12172
cummeRbund	235
marray	1890
chipseq	604
MethylSeekR	137
GOSemSim	16382
farms	49
PICS	115
cellHTS2	205
a4Core	158
affxparser	1607
geneplotter	7686
GeneExpressionSignature	64
genArise	52
vsn	5187
affyContam	96
safe	604
siggenes	3216
metaArray	14
aroma.light	1961
occugene	46
GOstats	1740
annmap	113
AGDEX	66
GeneticsDesign	13
HMMcopy	262
RRHO	97
phenoDist	11
MCRestimate	13
EasyqpcR	16
flowClust	840
FGNet	111
Harshlight	66
iFlow	3
hpar	274
xmapbridge	50
GraphAT	54
hapFabia	54
htSeqTools	15
diffGeneAnalysis	50
dagLogo	79
dexus	17
SCAN.UPC	151
stepNorm	51
frma	149
coGPS	53
MergeMaid	16
gprege	13
KEGGprofile	22
Rtreemix	55
copynumber	151
RBioinf	62
SQUADD	48
Streamer	57
FunciSNP	13
intansv	78
apComplex	62
bsseq	1420
OTUbase	59
flowPlots	53
SigFuge	54
betr	10
RCASPAR	47
clipper	98
RPA	99
qusage	389
DSS	966
TransView	53
Starr	13
RSVSim	64
factDesign	53
yaqcaffy	15
sRAP	14
inveRsion	16
pint	11
pathRender	57
neaGUI	7
bridge	17
chipenrich	158
MmPalateMiRNA	14
SLqPCR	58
nem	18
pRoloc	258
ArrayTools	17
iterativeBMAsurv	50
ppiStats	16
affyPara	16
BAGS	56
attract	69
DBChIP	16
MANOR	52
plethy	23
maDB	3
msmsEDA	276
CopyNumber450k	7
sangerseqR	877
savR	31
GenomicFiles	1288
QDNAseq	388
NetPathMiner	60
ChIPQC	330
alsace	16
PhenStat	58
ABSSeq	112
RUVSeq	934
makePlatformDesign	2
NGScopy	6
derfinderPlot	147
seqTools	120
SigCheck	54
ClassifyR	278
M3D	8
MGFM	58
mvGST	4
flowcatchR	54
mQTL.NMR	5
specL	56
Rintact	2
SemSim	2
arrayMagic	2
iSPlot	2
ChromoViz	2
rgsepd	53
gQTLBase	11
cpvSNP	54
GenomicRanges	41253
affyio	8304
clusterStab	78
ddCt	89
CAMERA	482
CNORfeeder	66
KEGGREST	34964
methylumi	1440
NarrowPeaks	14
snapCGH	108
VariantAnnotation	9331
MeasurementError.cor	46
GSEABase	8508
GEOquery	8955
DEGraph	66
Rchemcpp	14
arrayQualityMetrics	509
predictionet	13
rhdf5	19466
DiffBind	1035
annotationTools	126
xcms	1744
sigaR	14
AffyRNADegradation	58
TCC	183
a4Preproc	176
nudge	10
maSigPro	253
Heatplus	397
SNPchip	20
KEGGgraph	5511
HilbertVis	171
VegaMC	54
RmiR	14
goTools	63
Rcade	20
maskBAD	57
GEWIST	46
NOISeq	569
gaga	100
sscore	35
iBBiG	120
GenomeInfoDb	55886
ncdfFlow	1143
plw	14
EBcoexpress	74
gCMAP	15
ConsensusClusterPlus	2954
metagenomeSeq	1642
GenomicAlignments	23487
RCytoscape	12
flowFit	15
qpgraph	175
flipflop	13
GeneAnswers	25
staRank	61
LBE	244
qpcrNorm	59
a4Reporting	113
affyILM	64
gaggle	50
goProfiles	122
PAnnBuilder	13
CGHcall	406
Risa	62
GeneNetworkBuilder	72
RamiGO	11
flowMerge	134
ternarynet	53
ABarray	70
agilp	88
rTRMui	60
matchBox	51
RMAPPER	4
tspair	15
PROMISE	103
CellNOptR	192
pvca	244
OutlierD	14
exomeCopy	309
RNAinteract	80
BiRewire	113
rTRM	138
BAC	18
categoryCompare	66
cleaver	192
GOTHiC	86
ELBOW	14
geneRxCluster	52
AtlasRDF	8
matchprobes	2
flowCyBar	51
flowBin	66
S4Vectors	54007
UNDO	71
fastLiquidAssociation	55
DupChecker	6
RTools4TB	2
AnnBuilder	2
MethylMix	95
MPFE	42
MBAmethyl	39
Polyfit	8
ToPASeq	7
BridgeDbR	75
hiReadsProcessor	56
SemDist	48
Pbase	10
rain	88
saps	3
MEIGOR	53
proteoQC	9
AnalysisPageServer	8
MAIT	57
pRolocGUI	84
RSNPper	2
SAGElyzer	2
BeadExplorer	2
QuartPAC	59
ROC	1028
CRImage	77
BRAIN	107
CALIB	14
DART	60
DASiR	8
tkWidgets	1248
simpleaffy	101
BiocGenerics	54795
edgeR	22629
motifRG	15
RefPlus	42
QUALIFIER	15
rnaSeqMap	16
SPEM	69
LiquidAssociation	79
baySeq	403
graph	18291
rtracklayer	20972
casper	59
BADER	65
lumi	1129
flowStats	524
DNAcopy	5175
iASeq	49
RLMM	51
makecdfenv	167
MiRaGE	57
oligoClasses	1691
netresponse	65
affyPLM	1251
RMassBank	98
ROntoTools	212
RpsiXML	19
SpacePAC	93
MotIV	30
cancerclass	75
GGtools	19
charm	14
VanillaICE	183
GraphAlignment	54
rols	418
explorase	13
trigger	58
mcaGUI	14
EBSeq	410
HiTC	133
flowQB	16
HybridMTest	127
RTN	167
parody	95
CNVrd2	60
clippda	58
DEDS	13
Genominator	15
DAVIDQuery	7
MineICA	70
bgx	61
CGHnormaliter	64
OrderedList	79
PREDA	83
AffyTiling	8
R453Plus1Toolbox	63
GSEAlm	75
GeneSelector	14
HTSeqGenie	56
SLGI	15
vtpnet	73
inSilicoMerging	14
PathNet	63
GENE.E	11
ibh	56
maCorrPlot	51
MEDIPS	106
HCsnip	10
DrugVsDisease	117
Rsubread	2260
flowFP	152
randPack	54
BGmix	28
ASEB	54
SMAP	47
panp	53
seqbias	80
Clonality	33
NuPoP	68
MantelCorr	46
Rmagpie	51
IdMappingAnalysis	12
phenoTest	133
AnnotationHub	10902
lmdme	52
RedeR	326
CNORode	91
PGSEA	49
plateCore	14
methylMnM	72
logitT	37
XDE	60
MinimumDistance	64
KEGGSOAP	5
cn.farms	62
supraHex	429
flowMatch	67
biosvd	13
FRGEpistasis	53
sapFinder	13
COPDSexualDimorphism	3
ASSIGN	104
msQC	0
massiR	57
nondetects	69
compcodeR	81
CompGO	13
metaseqR	19
RGSEA	64
npGSEA	61
MoPS	7
GeneSpring	3
flowDensity	261
DOQTL	9
seqplots	11
flowClean	209
ballgown	647
IdeoViz	64
focalCall	6
MSGFgui	10
EBSeqHMM	54
systemPipeR	1183
erccdashboard	63
GOsummaries	60
Biostrings	44484
cellGrowth	13
BiocInstaller	498
XVector	46849
oneChannelGUI	13
affylmGUI	80
oligo	1614
lapmix	48
MBCB	51
nnNorm	55
reb	12
rSFFreader	10
ScISI	20
shinyTANDEM	13
SomatiCA	10
TargetScore	62
flowWorkspace	1285
methyAnalysis	19
chopsticks	87
CancerMutationAnalysis	15
DEGseq	160
rGADEM	276
rTANDEM	18
epivizr	115
pdmclass	11
impute	10291
gage	810
OSAT	61
BiocStyle	6287
biomvRCNS	50
pathview	4332
prot2D	12
tweeDEseq	131
LPEadj	47
microRNA	156
LMGene	14
methVisual	13
openCyto	674
ffpe	68
SSPA	65
manta	14
sSeq	170
gpls	165
gwascat	600
fmcsR	258
dyebias	56
flowQ	9
hopach	306
GeneGA	41
SpeCond	69
rMAT	11
mosaics	134
inSilicoDb	12
flowPeaks	176
cellHTS	10
genoCN	52
RGalaxy	16
DMRcate	830
chroGPS	13
DTA	85
a4Classif	111
cqn	279
rHVDM	12
virtualArray	6
splots	210
stepwiseCM	9
EBarrays	221
interactiveDisplay	99
GraphPAC	99
Cormotif	53
convert	145
DNaseR	5
plier	112
bigmemoryExtras	14
iontree	11
survcomp	1040
maigesPack	45
adSplit	66
AllelicImbalance	100
SANTA	59
Mulcom	73
CexoR	59
externalVector	2
arrayMvout	56
TEQC	66
Mirsynergy	11
maPredictDSC	57
GSRI	58
dualKS	15
EDDA	16
ChIPseeker	1775
meshr	137
MeSHDbi	250
SomaticSignatures	182
gaucho	11
Basic4Cseq	60
blima	53
PatientGeneSets	2
wavClusteR	57
GeneTraffic	3
MethylAid	87
RdbiPgSQL	2
GeneR	4
Rredland	2
simulatorZ	9
metagene	37
MultiMed	50
riboSeqR	40
cosmiq	55
Metab	31
STAN	16
pepXMLTab	57
gespeR	82
TSCAN	606
keggorth	2
stam	2
GeneTS	2
AIMS	429
GENESIS	339
BrowserVizDemo	3
diffHic	105
EMDomics	64
ENCODExplorer	8
podkat	51
RCyjs	70
BEclear	64
INSPEcT	65
caOmicsV	8
traseR	49
TimerQuant	0
EnrichedHeatmap	550
DAPAR	126
SICtools	44
dupRadar	102
lfa	281
goCluster	1
dcGSA	48
R4RNA	611
SIMAT	52
CODEX	102
mAPKL	12
birte	7
FISHalyseR	47
CAnD	10
FlowRepositoryR	9
seqPattern	645
SVM2CRM	7
TIN	49
TPP	89
erma	94
AnnotationHubData	370
ChIPComp	58
GEOsearch	4
hierGWAS	53
OperaMate	4
RareVariantVis	59
Path2PPI	56
rCGH	106
systemPipeRdata	0
exprExternal	1
Prostar	72
Imetagene	8
RCy3	937
globalSeq	50
gdsfmt	2092
LEA	515
gtrellis	127
BrowserViz	170
coMET	93
LowMACA	18
edge	96
parglms	47
R3CPET	58
InPAS	56
CausalR	61
sidap	0
Oscope	85
RTCGA	551
eudysbiome	44
ldblock	75
mtbls2	0
mmgmos	1
FindMyFriends	10
miRcomp	49
gcatest	49
ComplexHeatmap	13703
regioneR	2055
Cardinal	160
MeSHSim	3
DMRcaller	78
rGREAT	664
OmicsMarkeR	8
msa	1513
SELEX	50
sigsquared	47
MethTargetedNGS	47
HilbertCurve	80
LOLA	289
ProteomicsAnnotationHubData	10
TCGAbiolinks	3453
Guitar	134
SNPhood	55
GeneBreak	67
DChIPRep	9
widgetInvoke	2
multiClust	81
Rhtslib	23826
rcellminer	62
mogsa	160
sincell	56
immunoClust	62
pwOmics	103
cogena	82
pandaR	125
seq2pathway	112
similaRpeak	57
RTCGAToolbox	586
rnaseqcomp	58
ABAEnrichment	11
mirIntegrator	62
motifbreakR	203
LedPred	44
variancePartition	910
GenomeBase	1
TarSeqQC	15
SISPA	33
GUIDEseq	74
CNPBayes	7
scde	338
bim	1
rfcdmin	1
FamAgg	70
ggtree	19763
muscle	309
canceR	84
chromDraw	51
CopywriteR	24
GoogleGenomics	6
pmm	43
SummarizedExperiment	37464
soGGi	323
NanoStringQCPro	49
acde	61
HIBAG	125
IONiseR	67
destiny	685
genotypeeval	16
sbgr	2
XBSeq	9
SNAData	2
reposTools	1
DNABarcodes	166
MEAL	77
biobroom	180
SWATH2stats	60
iSNetwork	2
applera	1
lpsymphony	1175
kimod	6
normalize450K	46
ProtGenerics	11512
flowVS	98
RnBeads	283
ENmix	198
ensembldb	9823
RBM	55
skewr	40
RnaSeqSampleSize	94
bamsignals	1126
netbenchmark	8
DeMAND	48
iGC	47
miRLAB	60
myvariant	80
PGA	10
NanoStringDiff	91
OGSA	7
SEPA	6
ropls	1184
iCheck	51
pathVar	26
biomformat	5372
iCOBRA	164
BioQC	113
profileScoreDist	45
BubbleTree	67
conumee	152
cytofkit	25
diggit	51
GreyListChIP	960
RUVcorr	56
RNAprobR	7
IVAS	76
MatrixRider	59
ELMER	175
BBCAnalyzer	55
CNVPanelizer	61
fCI	48
metaX	3
Prize	7
synlet	47
DiffLogo	61
RiboProfiling	81
metagenomeFeatures	8
subSeq	66
y2hStat	1
transcriptR	65
consensusSeekeR	101
contiBAIT	54
CrispRVariants	136
Mergeomics	59
splineTCDiffExpr	1
PanVizGenerator	10
AneuFinder	87
scran	4627
DRIMSeq	311
HDF5Array	12383
miRNAmeConverter	54
Linnorm	216
SwathXtend	62
dada2	2166
epivizrServer	145
ImmuneSpaceR	65
covRNA	53
Director	41
MADSEQ	52
netprioR	45
SNPediaR	47
maftools	2560
RCAS	122
SPLINTER	58
MoonlightR	67
psichomics	73
yamss	60
flowPloidy	62
fCCAC	51
CancerInSilico	19
samExploreR	8
iCARE	106
IHW	712
ExpressionAtlas	158
GSALightning	50
SMITE	61
ggcyto	901
doppelgangR	118
debrowser	176
DEFormats	255
LymphoSeq	60
pbcmc	5
MultiDataSet	1192
FunChIP	62
geneplast	90
CancerSubtypes	122
fgsea	16231
ImpulseDE	6
ASAFE	46
qsea	62
MODA	51
eegc	81
LINC	7
SIMLR	247
KEGGlincs	66
MAST	2028
StarBioTrek	58
GOpro	117
chimeraviz	106
scater	6665
clustComp	54
tofsims	8
tximport	3327
cellity	62
EWCE	137
Glimma	1232
isomiRs	123
genphen	9
ExperimentHubData	297
MethPed	50
CINdex	68
MMDiff2	48
EGSEA	137
EGAD	60
epivizrStandalone	61
normr	133
CytoML	469
alpine	50
philr	182
proFIA	14
yarn	135
anamiR	8
BiocWorkflowTools	178
CCPROMISE	61
BUMHMM	48
ramwas	127
JunctionSeq	12
ISoLDE	41
OncoScore	53
PCAN	55
EpiCluster	0
flowAI	556
diffloop	30
recount	426
DeepBlueR	50
GRmetrics	80
ASpli	102
clusterExperiment	349
ccmap	75
M3Drop	585
matter	203
TVTB	60
MetaboSignal	115
synergyfinder	181
YAPSA	76
gCrisprTools	57
bigmelon	58
DelayedArray	42680
sparseDOSSA	37
gcapc	54
coseq	110
GenVisR	293
EBSEA	51
CountClust	11
BatchQC	103
QUBIC	134
sscu	47
psygenet2r	67
epivizrData	126
pqsfinder	74
pcaExplorer	474
covEB	47
MetCirc	67
methylKit	629
rDGIdb	79
chromstaR	86
AMOUNTAIN	88
annotatr	467
geneAttribution	50
clusterSeq	35
EmpiricalBrownsMethod	127
ROTS	202
chromPlot	131
cellTree	14
ExperimentHub	7345
nucleoSim	54
sevenbridges	61
Uniquorn	53
garfield	52
oppar	59
BgeeDB	122
dSimer	7
esetVis	75
switchde	53
CVE	6
MGFR	61
LOBSTAHS	54
statTarget	93
IWTomics	49
geneXtendeR	106
phosphonormalizer	47
BaalChIP	61
uSORT	46
MutationalPatterns	331
CellMapper	58
HelloRanges	131
MWASTools	147
RJMCMCNucleosomes	51
metaCCA	192
RImmPort	45
Chicago	89
QuaternaryProd	71
bacon	101
MultiAssayExperiment	4900
GMRP	49
SpidermiR	89
MBttest	48
recoup	52
PureCN	158
CHRONOS	55
ClusterSignificance	52
biosigner	81
Harman	165
Pigengene	118
NetCRG	0
bioCancer	73
crossmeta	150
SVAPLSseq	7
ctsGE	53
IPO	119
GeneGeneInteR	51
BayesKnockdown	49
treeio	19425
meshes	146
PharmacoGx	272
readat	8
regsplice	45
DEsubs	57
FitHiC	59
GAprediction	48
Anaquin	58
RnaSeqGeneEdgeRQL	2
SC3	406
RGraph2js	50
BasicSTARRseq	58
GenRank	6
GenoGAM	10
splineTimeR	70
DNAshapeR	72
CONFESS	58
odseq	67
InteractionSet	1844
BadRegionFinder	53
genbankr	132
msPurity	77
GEM	54
sights	51
SRGnet	7
PathoStat	67
signeR	72
Pi	75
BPRMeth	88
crisprseekplus	31
GRridge	17
scone	106
scDD	137
RTNduals	83
basecallQC	65
TSRchitect	11
cellscape	37
timescape	73
flowTime	60
GenomicDataCommons	1206
goSTAG	57
ideal	115
IntEREst	64
Logolas	8
MaxContrastProjection	8
Organism.dplyr	420
pathprint	7
beachmat	15055
IntramiRExploreR	46
EpiDISH	558
seqcombo	50
mfa	79
TFARM	44
MetaCyto	71
ANF	47
esATAC	94
cbaf	60
omicsPrint	52
LineagePulse	44
gep2pep	55
geneClassifiers	48
PPInfer	120
rqt	58
branchpointer	70
banocc	65
DMRScan	45
swfdr	55
GA4GHclient	106
heatmaps	242
metavizr	13
netReg	8
SingleCellExperiment	14455
diffuStats	62
SCnorm	92
oneSENSE	19
CEMiTool	136
coexnet	14
miRsponge	5
geoquery	1
amplican	76
ivygapSE	45
PROPS	50
restfulSE	119
chromswitch	30
trena	42
transcriptogramer	60
seqCAT	52
biobase	1
affyplm	0
rhvdm	0
REMP	66
ChIPexoQual	61
BioCor	81
splatter	424
STROMA4	32
hicrep	11
motifcounter	56
twoddpcr	50
Rhdf5lib	22897
methInheritSim	60
RVS	47
Scale4C	47
TReNA	2
motifmatchr	1306
DASC	2
GA4GHshiny	61
BiocSklearn	70
AUCell	2129
ChIPanalyser	51
TFHAZ	49
InterMineR	61
iterClust	48
methyvim	8
multiMiR	222
oncomix	46
vulcan	61
semisup	44
AnnotationFilter	10135
ATACseqQC	342
MIGSA	14
TCseq	149
EventPointer	61
methylInheritance	62
phenopath	86
scmap	259
ndexr	67
miRBaseConverter	125
epivizrChart	52
panelcn.mops	82
openPrimeRui	61
ontoProc	219
rhdf5client	143
stageR	181
TnT	45
tenXplore	56
runibic	76
SeqSQC	88
iranges	1
biostrings	0
sampleClassifier	56
discordant	79
GenomicScores	635
karyoploteR	884
RIVER	47
RITAN	60
IsoformSwitchAnalyzeR	254
CATALYST	464
epiNEM	140
GISPA	49
IMAS	55
multiOmicsViz	43
NADfinder	54
GENIE3	1166
zFPKM	105
HiCcompare	287
SPONGE	64
cytolib	2786
DEP	478
apeglm	3384
openPrimeR	125
PathwaySplice	6
pcxn	47
chromVAR	1087
scPipe	130
topdownr	70
TFEA.ChIP	63
TCGAbiolinksGUI	27
RaggedExperiment	933
ImpulseDE2	12
MCbiclust	50
pgca	45
OPWeight	48
RTNsurvival	64
scoreInvHap	53
rexposome	100
Rbowtie2	315
Onassis	9
TMixClust	60
MSstatsQC	70
scfind	6
JASPAR2018	3
methimpute	55
anota2seq	74
DelayedMatrixStats	15944
BASiCS	163
bnbc	111
annbuilder	0
loci2path	45
MAGeCKFlute	364
mimager	60
DaMiRseq	114
cydar	81
biotmle	61
BiocFileCache	25545
funtooNorm	58
consensusOV	108
M3C	693
miRmine	34
Doscheda	56
MIRA	120
shortread	0
GOfuncR	285
flowclust	1
POST	7
cellbaseR	69
BioMedR	3
BLMA	70
msgbsR	69
mapscape	48
wiggleplotr	166
RProtoBufLib	2680
zinbwave	877
microbiome	1618
DMCHMM	49
ClusterJudge	51
IrisSpatialFeatures	3
biocinstaller	2
mpra	54
progeny	400
slalom	102
bsgenome	0
bcSeq	55
signet	6
MetaNeighbor	89
enrichplot	16939
MetaGxOvarian	2
mCSEA	106
CHARGE	6
igvR	105
InTAD	50
RSeqAn	80
singscore	1245
srnadiff	47
MSstatsQCgui	41
CAGEfightR	152
decontam	1604
CellTrails	53
appreci8R	97
DEqMS	218
LRBaseDbi	110
ipdDb	101
miRSM	35
Rmmquant	45
MPRAnalyze	63
compartmap	36
rScudo	49
annotationdbi	1
dnacopy	1
dmrseq	195
perturbatr	7
phantasus	146
pogos	62
FELLA	126
slingshot	1426
hipathia	125
sevenC	48
singleCellTK	237
SummarizedBenchmark	54
methylGSA	104
CAMTHC	4
scruff	67
SIMD	47
sparsenetgls	44
plpe	0
COCOA	66
HiCBricks	146
ProteoMM	74
RNASeqR	8
artMS	75
tRNAdbImport	111
deco	10
seqlogo	0
DelayedDataFrame	60
rbgl	0
tkwidgets	0
genomicfeatures	0
kissDE	55
DropletUtils	2605
iSEE	456
omicplotR	61
DominoEffect	53
onlineFDR	44
iCNV	51
rWikiPathways	382
SEPIRA	29
SIAMCAT	110
SparseSignatures	53
TissueEnrich	161
ccfindR	89
tximeta	1135
GeneAccord	9
MetID	50
topgo	0
hierinf	41
countsimQC	137
levi	43
PrecisionTrialDrawer	7
RGMQL	49
martini	51
Rgin	7
ChIPSeqSpike	9
GSEABenchmarkeR	78
RcisTarget	840
kmknn	0
mdp	52
PowerExplorer	6
RNAdecay	33
GDSArray	126
CytoDx	64
Trendy	59
coRdon	166
HPAanalyze	119
NormalyzerDE	145
IsoCorrectoR	92
OMICsPCA	61
FCBF	53
LoomExperiment	581
MTseeker	3
snpmatrix	1
hmdbQuery	70
tRNAscanImport	72
powerTCR	383
Sconify	50
roma	1
BiocVersion	57896
TCGAutils	855
DEsingle	248
diffcyt	341
netSmooth	64
plyranges	1231
TxRegInfra	7
GIGSEA	42
maser	123
ACE	88
Ularcirc	60
strandCheckR	49
OUTRIDER	201
genomicranges	0
ERSSA	50
MSstatsTMT	271
KinSwingR	50
bayNorm	78
glmSparseNet	139
abseqR	52
universalmotif	479
transite	52
ADAM	110
decompTumor2Sig	123
IsoCorrectoRGUI	54
scTensor	122
DNABarcodeCompatibility	42
degseq	0
MACPET	9
vidger	97
DEScan2	62
diffcoexp	178
SDAMS	52
seqsetvis	60
TFutils	76
missRows	49
qPLEXanalyzer	67
GARS	55
GateFinder	55
ChIC	21
INDEED	42
multiHiCcompare	177
condcomp	3
REBET	42
SCBN	75
BiocNeighbors	10076
pkgdeptools	0
mixOmics	2902
tRNA	141
PepsNMR	114
omicRexposome	54
MDTS	50
GDCRNATools	291
iteremoval	8
BEARscc	50
adaptest	5
DEComplexDisease	10
CTDquerier	50
IMMAN	46
OmaDB	194
RandomWalkRestartMH	114
drawProteins	182
TTMap	44
NBSplice	11
iasva	47
BiocOncoTK	73
MetNet	49
brainImageR	2
EnhancedVolcano	4163
mlm4omics	3
nuCpos	47
XINA	42
FoldGO	33
breakpointR	62
edger	1
ExCluster	43
QSutils	55
AffiXcan	55
cTRAP	58
BDMMAcorrect	37
Wrench	1624
gostats	1
bayseq	0
cntools	0
GeneStructureTools	78
scmeth	67
CellScore	47
scFeatureFilter	46
BiFET	53
ddPCRclust	68
icetea	50
BioNetStat	75
gsean	58
ASICS	78
ORFik	201
sigFeature	203
sesame	654
FastqCleaner	81
gwasurvivr	79
plotGrouper	46
slinky	6
BUScorrect	46
consensus	47
celaref	68
BiocPkgTools	159
primirTSS	60
gpart	15
cicero	212
NeighborNet	26
HIREewas	46
TimeSeriesExperiment	9
AssessORF	51
consensusDE	64
VCFArray	59
category	0
rgraphviz	1
logitt	1
scRecover	55
batchelor	3779
TNBC.CMS	55
DeMixT	94
SMAD	45
miRspongeR	47
CNVRanger	123
qckitfastq	55
netboost	39
CellMixS	78
SpatialCPie	72
scMerge	488
PoTRA	7
RNAmodR	115
SQLDataFrame	43
epihet	9
TOAST	376
AlphaBeta	51
gramm4R	4
deltaCaptureC	50
Autotuner	6
idr2d	49
scPCA	85
CNVfilteR	56
HCAExplorer	3
ASpediaFI	8
RCM	56
BiocSingular	11768
profileplyr	223
alevinQC	78
metagene2	65
DiscoRhythm	59
Rcwl	102
proBatch	35
ngsReports	71
fishpond	277
gpuMagic	48
Structstrings	152
SubCellBarCode	49
SingleR	3803
RNAmodR.AlkAnilineSeq	56
GNET2	49
muscat	399
survtype	50
brendaDb	45
scBFA	52
MOSim	46
scGPS	53
CrossICC	3
DMCFB	39
arrayexpress	1
biscuiteer	62
MMUPHin	103
scTGIF	135
geometadb	0
mitch	62
qsmooth	126
MOFA	7
CHETAH	94
bigPint	42
evaluomeR	52
phemd	40
VennDetail	213
SharedObject	143
TPP2D	49
Maaslin2	989
XCIR	4
ssPATHS	40
MACSQuantifyR	41
oppti	42
onechannelgui	0
selectKSigs	45
PAIRADISE	82
topconfects	166
PAST	45
Rhisat2	219
infercnv	1053
pipeFrame	167
RcwlPipelines	92
celda	640
Modstrings	208
SpectralTAD	86
adductomicsR	55
PrInCE	54
debCAM	59
GenomicOZone	58
ssrch	75
CoRegFlux	3
SigsPack	48
KnowSeq	53
AWFisher	54
calm	41
microbiomeDASim	54
pwrEWAS	34
methylCC	70
tradeSeq	488
MethCP	9
MSstatsSampleSize	24
RNAsense	41
flowSpy	4
cliqueMS	110
rsamtools	0
pathwayPCA	72
GAPGOM	8
mnem	146
atSNP	66
pram	43
OmicsLonDA	25
animalcules	110
DepecheR	149
OVESEG	45
cytofast	6
HCABrowser	4
sRACIPE	59
SynMut	44
MetaVolcanoR	61
sojourner	11
SCANVIS	59
proDA	217
circRNAprofiler	68
geneticsbase	0
ReactomeGSA	223
iterativebmasurv	0
flowSpecs	65
arrayqualitymetrics	0
SAIGEgds	59
fcoex	81
blacksheepr	54
chippeakanno	0
gscreend	43
brainflowprobes	52
BiocSet	247
cummerbund	1
graper	45
rmelting	64
AMARETTO	119
enrichTF	77
CellBench	127
sitePath	52
Melissa	47
StructuralVariantAnnotation	208
dcanr	112
RepViz	104
cola	123
BioMM	29
RNAmodR.ML	49
SEtools	126
SBGNview	160
fcScan	50
HiLDA	67
IgGeneUsage	44
hypeR	69
VariantExperiment	52
MMAPPR2	22
gemini	47
LinkHD	48
ALPS	5
GmicR	64
MEB	44
OmnipathR	511
scDblFinder	1340
methrix	77
schex	227
DEWSeq	57
MBQN	50
ceRNAnetsim	43
gseabase	0
CluMSID	62
nanotatoR	103
mbkmeans	448
NBAMSeq	82
BANDITS	109
projectR	103
TreeSummarizedExperiment	1471
CopyNumberPlots	153
GladiaTOX	42
lipidr	186
scAlign	16
HumanTranscriptomeCompendium	51
RNAmodR.RiboMethSeq	52
BUSpaRse	192
ncGTW	41
PhyloProfile	72
divergence	41
widgettools	0
Spaniel	73
waddR	52
BioTIP	70
pulsedSilac	6
signatureSearch	211
biomart	0
netboxr	10
PCAtools	1157
doseR	44
Xeva	56
scds	489
ADAMgui	89
ViSEAGO	121
Qtlizer	47
APAlyzer	66
lionessR	49
target	44
PERFect	41
peakPantheR	56
GCSscore	27
dearseq	165
DIAlignR	54
AnVIL	603
rfaRm	40
rhdf5filters	18740
methylSig	69
eisaR	100
ROSeq	42
spqn	49
escape	323
PeacoQC	208
structToolbox	101
uncoverappLib	54
Rfastp	134
scTHI	42
wpm	51
SCATE	85
hummingbird	44
FilterFFPE	43
ANCOMBC	1202
FScanR	24
tomoda	40
tidySingleCellExperiment	177
sigpathway	0
bnem	55
parallel	1
tcltk	1
mina	43
ttgsea	80
BumpyMatrix	546
mumosa	65
PoDCall	44
BgeeCall	49
dpeak	27
weitrix	48
cytomapper	311
combi	55
GGPA	43
metaseqR2	47
DAMEfinder	52
sparseMatrixStats	15185
CARNIVAL	153
SimFFPE	46
TBSignatureProfiler	62
peco	45
RNAAgeCalc	71
basilisk.utils	4284
QFeatures	1285
multiGSEA	108
simplifyEnrichment	709
MultiBaC	64
SpatialExperiment	1527
metabolomicsWorkbenchR	74
transomics2cytoscape	46
RadioGx	61
ctgGEM	5
MouseFM	97
UMI4Cats	56
RIPAT	31
multicrispr	58
facets	0
aggregateBioVar	64
AnVILBilling	47
CellaRepertorium	57
GWAS.BAYES	47
dasper	22
densvis	3271
bambu	272
ExperimentSubset	52
AlpsNMR	59
omicsmarker	0
prostar	0
rlang	335
calib	0
simpleSingleCell	0
base	1
grDevices	1
UTAR	0
CNVgears	30
brew	68
RColorBrewer	14
SplicingFactory	39
PubScore	5
packFinder	48
scry	227
tidybulk	192
receptLoss	39
FRASER	105
MsCoreUtils	3482
BiocDockerManager	24
SingleCellSignalR	249
vasp	3
Dune	44
SPsimSeq	131
Rtpca	43
scDataviz	76
TADCompare	81
RegEnrich	102
Nebulosa	964
idpr	63
BiocIO	18951
zellkonverter	1018
BSgenome.Hsapiens.UCSC.hg19	6
rsemmed	41
ISAnalytics	51
ChromSCape	62
MSEADbi	4
ADImpute	68
VERSO	44
GSgalgoR	44
NewWave	110
SpatialDecon	173
vcfR	1
datasets	1
grid	1
graphat	0
magrittr	25
stats	1
KEGG.db	1
flowGraph	47
CSSQ	45
CoreGx	366
dittoSeq	1333
ribosomeProfilingQC	76
spicyR	180
glmGamPoi	3717
HIPPO	45
distinct	209
tscR	22
ROCpAI	41
ribor	45
DegNorm	55
frenchFISH	38
pageRank	55
DEXICA	0
proActiv	60
ncRNAtools	44
MSPrep	103
MSstatsTMTPTM	4
MSstatsConvert	477
NanoMethViz	77
megadepth	120
marr	42
biocthis	211
famat	56
dichromat	2
sendmailR	2
RLassoCox	48
PFP	20
easyreporting	48
scMAGeCK	8
BRGenomics	155
CiteFuse	90
cmapR	396
MatrixGenerics	39083
exomePeak2	101
optimalFlow	55
GCSConnection	5
TAPseq	53
scClassify	84
scHOT	64
struct	148
SCOPE	54
TreeAndLeaf	124
pipeComp	49
BrainSABER	8
Omixer	49
SynExtend	50
rrvgo	440
scCB2	50
PloGO2	70
VplotR	57
ggtreeExtra	995
sarks	42
flowCut	98
ResidualMatrix	3381
MethReg	69
preciseTAD	54
SeqGate	40
GCSFilesystem	6
HPAStainR	18
MSstatsPTM	189
BayesSpace	219
microbiomeExplorer	75
musicatk	77
tidySummarizedExperiment	314
AnVILPublish	48
MOGAMUN	48
SCFA	43
pga	0
hicbricks	0
methods	1
string	1
VarCon	42
tools	1
utils	1
GO.db	14
Homo.sapiens	5
degraph	0
GenomicDistributions	87
biobtreeR	47
EnMCB	47
clustifyr	130
netDx	49
NoRCE	49
snapcount	54
GeneTonic	255
sangeranalyseR	175
corral	73
Spectra	1412
HCAMatrixBrowser	3
fmrs	115
EpiTxDb	82
CytoTree	17
MesKit	67
reconsi	48
ILoReg	42
ToxicoGx	63
PhosR	103
GenomeInfoDbData	19
org.Hs.eg.db	14
systemPipeShiny	56
periodicDNA	45
customCMPdb	49
compiler	1
moanin	121
rstudio	1
labeling	130
ReactomeContentService4R	97
splines	1
stats4	1
geneLenDataBase	10
hgu133plus2.db	7
NPARC	51
rSWeeP	43
MEAT	42
ExploreModelMatrix	148
OpenStats	44
LACE	106
timeOmics	67
cBioPortalData	445
scuttle	9699
GSEAmining	62
snifter	132
padma	47
POMA	76
gmoviz	49
GWENA	174
TileDBArray	45
TimiRGeN	65
infinityFlow	64
velociraptor	112
Informeasure	35
recountmethylation	58
affio	0
spatialHeatmap	148
rnaEditr	46
cfDNAPro	53
lefser	578
cindex	0
graphics	1
BSgenome.Hsapiens.UCSC.hg38	10
censcyt	60
GEOfastq	60
nempi	54
CAEN	40
CeTF	78
pmp	114
MOMA	57
iSEEu	107
GPA	47
regutools	61
MicrobiotaProcess	490
basilisk	4696
randRotation	40
bluster	4784
rebook	180
getDEE2	45
msImpute	84
nearBynding	46
scp	125
MOFA2	432
scRepertoire	363
Herper	157
recount3	309
metabCombiner	47
ga4ghclient	0
metapod	4609
bitops	7
shinyepico	63
PFAM.db	10
TxDb.Hsapiens.UCSC.hg19.knownGene	5
diffUTR	46
drugTargetInteractions	56
RCSL	31
autonomics	52
awst	52
barcodetrackR	49
HubPub	110
RiboDiPA	48
interacCircos	57
PhIPData	95
svaRetro	58
OSCA.basic	20
scAnnotatR	124
veloviz	46
VAExprs	41
csawBook	4
ebimage	1
ichorCNA	0
rprimer	70
coMethDMR	52
BOBaFIT	58
SOMNiBUS	51
mia	1433
Rbec	52
ReactomeGraph4R	40
POWSC	56
cosmosR	68
lisaClust	131
systemPipeTools	53
sechm	148
DelayedRandomArray	84
imcRtools	183
epistack	48
ODER	20
scShapes	42
cageminer	54
deconvR	63
ggspavis	131
biodbLipidmaps	44
Cepo	168
rGenomeTracks	44
cliProfiler	46
mosbi	46
TargetDecoy	41
MicrobiomeProfiler	100
genomicInstability	45
ggmanh	107
CNVMetrics	46
crisprBase	156
mulcom	0
IlluminaHumanMethylation450kmanifest	5
VGAM	12
ramr	42
memes	183
GeomxTools	397
dir.expiry	4194
planet	176
MsBackendMassbank	72
decoupleR	967
cyanoFilter	48
XNAString	47
hca	61
miQC	104
MungeSumstats	965
MQmetrics	44
vissE	98
HGC	58
fobitools	46
DelayedTensor	46
FindIT2	52
GEOexplorer	57
scanMiR	73
m6Aboost	39
synapsis	40
GeoDiff	76
biodbKegg	63
biodbUniprot	48
BioPlex	4
mitoClone2	53
pairkat	38
MsBackendRawFileReader	58
pengls	39
netZooR	57
BentoBox	0
hermes	91
GBScleanR	40
KBoost	41
BloodGen3Module	120
condiments	84
PhenoGeneRanker	38
CytoGLMM	92
wppi	43
SCArray	75
MSstatsLOBD	43
dce	67
Travel	4
treekoR	54
cbpManager	50
OSCA	5
FLAMES	74
spatialDE	99
ProteoDisco	48
OSCA.advanced	19
scTreeViz	49
NxtIRFcore	21
traviz	56
sparrow	119
methylclock	146
iPath	41
InteractiveComplexHeatmap	368
conclus	6
tricycle	203
MsBackendMgf	464
epidecodeR	43
mirTarRnaSeq	59
methylscaper	46
cellmigRation	44
DExMA	60
epigraHMM	52
MACSr	106
midasHLA	56
supersigs	45
rawrr	203
CNViz	50
nullranges	155
segmenter	53
Dino	52
txcutr	41
MSstatsLiP	69
biodbHmdb	56
enhancerHomologSearch	53
transformGamPoi	66
ORFhunteR	48
TrajectoryUtils	1824
NanoStringNCTools	385
BioNERO	245
FEAST	110
fedup	46
scClassifR	3
TrajectoryGeometry	38
CIMICE	48
CelliD	247
msqrob2	111
multiSight	77
fgga	44
MatrixQCvis	118
Summix	37
SingleMoleculeFootprinting	49
HiCDCPlus	73
OSCA.intro	70
OSCA.workflows	36
quantiseqr	445
CONSTANd	45
geva	40
GenomicSuperSignature	52
spatzie	46
NanoTube	80
spiky	43
svaNUMT	58
NeuCA	33
ggmsa	495
metapone	61
scanMiRApp	55
dStruct	42
orthogene	318
RLSeq	39
CyTOFpower	53
surfaltr	46
benchdamic	79
netOmics	43
BUSseq	45
RiboCrypt	47
scatterHatch	39
BSgenome.Hsapiens.NCBI.GRCh38	1
sccomp	90
KaryoploteR	0
clusterprofiler	1
sitadela	44
MetaboCoreUtils	1150
MAGAR	153
miloR	256
TraRe	6
mistyR	87
airpart	53
immunotation	46
MsFeatures	1602
biodb	192
LRcell	51
satuRn	253
scReClassify	42
plotgardener	337
easier	133
atena	110
miaSim	95
bugsigdbr	165
tripr	45
targetsearch	0
bayespeak	0
mfuzz	0
ScaledMatrix	11708
granulator	115
VaSP	54
DeepPINCS	78
tLOH	44
ComPrAn	39
ppcseq	46
miaViz	230
InterCellar	74
ModCon	39
PDATK	81
epialleleR	54
IRISFGM	81
ptairMS	46
SingleRBook	3
rmspc	52
TRESS	93
tanggle	60
monaLisa	119
microbiomeMarker	365
csdR	43
Cogito	43
MAI	51
cytoKernel	42
HPiP	46
CellBarcode	59
biodbChebi	80
OSCA.multisample	20
BindingSiteFinder	58
CompoundDb	350
MuData	54
mbOmic	18
PanomiR	60
MASS	222
globals	27
susieR	18
evaluate	304
checkmate	133
devtools	45
memoise	16
Matrix	301
packrat	37
rsconnect	62
BiocBaseUtils	5143
ASURAT	60
htmltools	291
webshot	28
pkgload	218
scMET	47
plyr	124
formatters	2
RedisParam	40
single	45
FDb.InfiniumMethylation.hg19	5
waiter	10
Rsolnp	2
uwot	34
R.rsp	1
BiocManager	172
samr	5
restfulr	8
kpmt	0
purr	0
lsa	8
coloc	16
JASPAR2020	6
RcppAnnoy	36
hdrcde	6
colorRamps	10
FlowSorted.CordBloodCombined.450k	9
org.Rn.eg.db	9
ccdata	9
phenomis	53
IlluminaHumanMethylationEPICanno.ilm10b4.hg19	5
omada	36
MALDIquant	3
FuseSOM	49
bookdown	35
rpart	72
xaringanExtra	1
curatedMetagenomicData	0
polysat	0
ggsignif	9
recipes	67
ipred	44
units	66
Markdown	0
admixtools	0
easypar	0
ggforestplot	0
peakPick	0
signature.tools.lib	0
unbalanced	0
WGSmapp	0
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qrnn	1
RNeXML	1
servr	3
spaMM	1
SOAR	0
startupmsg	0
spatstat.utils	19
stabs	1
tclust	1
trust	0
tseriesChaos	0
visNetwork	3
xlsxjars	1
abc.data	0
afex	1
AlgDesign	1
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BayesianTools	0
bedr	0
bigassertr	1
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Boruta	0
cgdsr	1
calibrate	1
chemometrics	1
clustree	1
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raster	43
terra	53
sparklyr	10
tidytree	38
gtable	139
gWidgets2tcltk	0
rj.gd	0
future.apply	97
aplot	31
geosphere	10
sticky	1
leaps	1
findpython	10
bayesplot	10
enc	0
extraTrees	0
rJava	39
expm	17
here	2
klaR	2
dtw	1
bigrquery	15
rematch2	1
subselect	1
superpc	1
RAthena	10
RPostgres	20
reshape	2
odbc	21
paws.security.identity	11
paws.cost.management	11
SparseM	3
amgen.okta.client	1
s2	61
proj4	17
GSA	1
CompQuadForm	1
correlation	1
diagram	1
doRNG	3
diveRsity	0
EasyABC	0
elliptic	1
ergm.count	0
fdrtool	2
fracdiff	3
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gdistance	0
GillespieSSA	0
glmmML	1
GUTS	0
imagerExtra	0
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interp	12
jiebaR	0
labdsv	1
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MIIVsem	0
mltools	0
network	2
np	0
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pan	1
penalized	1
esquisse	2
fork	1
Exact	1
dotCall64	6
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lgr	1
pins	39
riskRegression	1
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Runuran	1
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padr	1
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future.callr	3
bench	1
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MCMCglmm	1
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webmockr	1
xaringanthemer	1
dittodb	1
ggPMX	1
ipaddress	1
jsTreeR	1
pmtables	1
partitions	1
randtoolbox	1
Rsmlx	1
reda	1
spam	4
keyring	6
quarto	5
rvg	2
npde	1
biodbNci	41
terraTCGAdata	48
extraChIPs	61
cytoMEM	89
scales	91
hms	97
knitr	251
goSorensen	50
sessioninfo	29
remotes	86
fansi	219
tidyr	116
readr	96
shinyjs	5
desc	113
regioneReloaded	45
katdetectr	51
DepInfeR	42
cardelino	58
mice	12
gsmoothr	5
R.devices	8
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JADE	1
perm	7
scBubbletree	46
simpleSeg	68
Illumina450ProbeVariants.db	1
magrene	42
randomcoloR	5
sparsesvd	17
docopt	6
Signac	11
proteasy	30
isva	5
NADA	5
truncnorm	4
Rfast	15
ggpointdensity	6
blme	6
octad	51
HiContacts	97
openssl	287
RcppParallel	15
zenith	128
Voyager	98
clusterprofielr	0
blob	98
SPIAT	101
agricolae	6
codetools	38
plotly	127
ggtreeDendro	57
N2R	0
tidyjson	0
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HandTill2001	1
epiR	3
bit	56
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rngtools	2
doBy	1
formatR	29
roxygen2	96
tweenr	12
highr	61
AneuFinderData	0
BSgenome.Mmusculus.UCSC.mm9	0
gada	0
leafcutter	0
mobster	0
MutationTimeR	0
signature.tools.lib.v2.1	0
signature.tools.lib.back	0
ncdf4	8
phylobase	1
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rentrez	1
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rlemon	1
RUnit	5
sampling	1
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tensorA	6
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wikitaxa	1
WikipediR	1
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acepack	2
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bigmemory	1
BiasedUrn	12
bezier	1
bigreadr	0
BMA	1
bridgesampling	1
corpcor	2
qcNvs	0
sjPlot	1
htmlwidgets	219
furrr	12
nloptr	42
rcdk	10
tfruns	12
rrBLUP	1
clusthaplo	0
biganalytics	1
forestplot	1
sp	81
stringdist	18
loo	10
mlbench	10
plotmo	1
statmod	3
survMisc	2
circlize	28
shape	29
Cubist	1
gplots	46
RandomFields	0
RandomFieldsUtils	0
Rdpack	44
npsurv	1
multcomp	40
paws.storage	46
r2d3	1
gsrc	0
ASExtras4	0
wk	64
vapour	0
planttfhunter	38
semsim	1
flowworkspace	0
msigdbr	3
GOplot	0
deSolve	37
DiceDesign	7
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fma	0
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ggvis	0
gllvm	0
h2o	3
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janeaustenr	3
Iso	1
interpretR	0
KODAMA	0
LaplacesDemon	1
ks	6
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mitml	1
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oompaData	3
conquer	2
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memisc	1
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pdftools	8
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pointblank	1
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sensitivity	1
writexl	12
tracee	1
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org.Sc.sgd.db	1
rtkore	1
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stringfish	5
FNN	60
pd.atdschip.tiling	0
cxAnalysis	0
Rcgmin	1
asht	1
campsismod	1
evd	1
precommit	1
profile	0
rhub	3
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timechange	72
rngWELL	1
rxode2et	1
nlmixr2data	1
vcr	1
mclogit	1
COTAN	76
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biodbNcbi	47
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rifi	37
RolDE	46
omicsViewer	50
protGear	50
RAREsim	39
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callr	113
caret	45
cluster	78
gert	56
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farver	20
GenomicInteractionNodes	44
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ps	222
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IlluminaHumanMethylationEPICanno.ilm10b2.hg19	5
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SpotClean	86
shinyhelper	5
broom	96
openxlsx	23
xgboost	43
TxDb.Mmusculus.UCSC.mm10.knownGene	5
R.filesets	8
mutoss	8
ALL	10
R.cache	2
shinyFiles	12
brave	1
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org.Mm.eg.db	12
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EnsDb.Hsapiens.v75	5
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randomForest	3
ctree	0
NoiseFiltersR	0
SNPlocs.Hsapiens.dbSNP151.GRCh38	0
tkrgl	0
TxDb.Hsapiens.UCSC.hg38.knownGene	1
proto	1
progressr	41
R.matlab	0
repr	2
resample	0
rms	3
Rtsne	18
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sm	1
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tmle	1
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mi	0
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rvest	56
paws.compute	11
gmp	13
adegenet	1
graphql	1
httptest	3
pd.hg.u133.plus.2	0
pd.mouse430.2	0
distributional	12
rstan	11
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ica	2
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config	19
rex	29
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git2r	32
rstanarm	1
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ape	17
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sommer	1
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insight	7
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org.Ce.eg.db	1
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influenceR	3
irace	0
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meta	1
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mapbayr	1
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iml	0
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qs	6
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Bioconductor	1
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rticles	1
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eha	1
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tidyvpc	1
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pingr	8
maps	9
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RCX	92
biodbMirbase	37
standR	110
crisprScore	162
borealis	48
CBEA	104
httr	201
tinytex	257
IlluminaHumanMethylation450kanno.ilmn12.hg19	7
commonmark	136
ggplot2	235
fontawesome	114
shiny	191
processx	231
testthat	240
RCurl	112
readxl	81
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e1071	42
consICA	105
factR	50
demuxmix	206
admisc	29
iterators	6
aroma.core	8
SeuratObject	27
aws.s3	6
ash	6
updateObject	41
ATACCoGAPS	45
filelock	51
CircSeqAlignTk	50
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TSP	18
igraph	131
egg	5
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RcppZiggurat	6
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MSstatsShiny	95
signifinder	58
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digest	276
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TCGAbiolinksGUI.data	1
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uroot	0
ABSOLUTE	0
audio	1
BB	1
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biom	0
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utf8	207
modelr	47
ggfun	36
dtplyr	47
patchwork	50
RcppEigen	112
babelgene	3
gargle	81
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rj	0
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hgug4112a.db	0
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org.Bt.eg.db	1
org.Gg.eg.db	1
org.Cf.eg.db	1
org.Dr.eg.db	1
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TREG	46
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nnSVG	86
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rgoslin	60
viridisLite	115
xfun	302
credentials	36
glue	103
cli	221
cpp11	188
tzdb	84
TEKRABber	103
future	129
latticeExtra	10
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DT	199
class	62
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venn	8
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R.huge	5
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gemma.R	54
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zCompositions	8
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GenomAutomorphism	37
isoband	46
car	50
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yaml	139
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glmnet	19
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sys	155
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BSgenome.Hsapiens.1000genomes.hs37d5	1
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lle	0
mutSigExtractor	0
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ssh.utils	0
sandwich	7
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signature.tools.lib.v2.1.2	0
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arm	1
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umap	10
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mouse4302.db	0
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usethis	97
whisker	63
rapidjsonr	1
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rjson	15
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timeDate	29
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plumber	6
sc3	0
gsw	0
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dr	0
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cem	1
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foghorn	1
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LinTInd	48
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GenProSeq	38
UCell	1164
tomoseqr	40
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ompBAM	99
nlme	192
rmarkdown	251
clipr	29
xml2	192
tibble	122
tidyselect	62
vroom	158
httpuv	237
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dbplyr	129
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eds	335
rARPACK	5
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aroma.apd	8
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scrime	5
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BSgenome.Cfamiliaris.UCSC.canFam3	5
FlowSorted.Blood.EPIC	9
fda	9
ExomeDepth	1
ATACseqTFEA	59
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matrixStats	135
mime	33
XML	86
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lotri	1
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lme4	122
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mgcv	224
rstudioapi	143
gtools	38
Hmisc	27
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svglite	25
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scifer	49
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iSEEhub	102
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oncoscanR	41
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bandle	56
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fresh	6
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R.methodsS3	5
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RMySQL	3
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TxDb.Mmusculus.UCSC.mm10.ensGene	0
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Rwave	7
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SimComp	1
rdd	1
triangle	1
ClassDiscovery	1
dynlm	1
dotwhisker	1
casebase	1
beepr	1
PASWR	1
NlcOptim	1
igraphdata	1
alr4	1
netrankr	1
censReg	1
pimeta	1
carrier	1
nestedLogit	1
NISTunits	1
GCS	1
msigdb	1
syuzhet	1
ICSNP	1
starter	1
TNO	1
saseR	5
liana	0
sen2r	1
tidytlg	1
r	1
ggeasy	1
DAISIE	1
RSelenium	1
dbaccess	1
Rhdf5	1
tern.gee	1
biocroxytest	3
PIPETS	3
ggtern	6
omnibus	1
treemapify	1
prettymapr	1
AdaptGauss	1
argusDS.data.visualisation	1
iSEEfier	2
proteomixr	1
tradeseq	1
mutationalpatterns	1
hdnom	1
confoundr	1
APCtools	1
rearrr	1
qbaDatabase	1
curatedTCGAData	1
MouseGastrulationData	1
rMisbeta	1
assertive	1
coxphw	1
biostat3	1
daff	1
00TABLE	1
wmtsa	1
translations	1
TLMoments	1
PBSddesolve	1
mlr3spatiotempcv	1
LinMod2	1
GeDi	2
cyphr	1
SimDesign	1
MonoPhy	1
dataMaid	1
degreenet	1
egor	1
devutils	1
rrsq	1
R2admb	1
mctq	1
angrycell	1
GraphGallery	1
wrMisc	1
metaarray	0
ggraph2	1
rbokeh	1
Banksy	6
tpSVG	3
treeclimbR	3
CytoMDS	2
secretbase	1
survex	1
radiant.data	1
reghelper	1
redland	1
DataVisualizations	1
argusDS.distributions	1
InraeThemes	1
ggwordcloud	1
ggtreeSpace	2
complexHeatmap	0
seqmagick	1
enrichPlot	1
cypress	2
bladderbatch	1
ARRmData	1
chromstaRData	1
CoxPhLb	1
errorlocate	1
easyalluvial	1
parathyroidSE	1
decipher	1
genomationdata	1
RcppAlgos	1
base2grob	1
ontologyPlot	1
awsMethods	1
assertive.strings	1
iBreakDown	1
EVMS	1
astsa	1
ClustAll	2
name	1
haplo.stats	1
iotools	1
RPresto	1
epiregulon.extra	2
cellxgene.census	1
CAbiNet	1
PIUMA	2
UPDhmm	2
CMAverse	0
BREW3R.r	2
OHCA	0
ggchicklet	0
DALEX2	1
StatCharrms	1
ips	1
DESEQ	1
nestcolor	1
ggiraphExtra	1
boomer	1
gameofthrones	1
PKreport	1
binman	1
bcp	1
gralarkivar	1
ace.fma	1
preproc.iquizoo	1
biocmanager	1
deconstructSigs	1
scplot	1
ggvegan	1
hgu133plus2cdf	1
configr	1
pd.hta.2.0	1
seqArray	1
orderedlist	0
argusDS.gamlss.smoothers	1
colMeans	1
vitae	1
pspearman	1
methyLImp2	2
smoothclust	2
kinship2	1
methodical	3
GrafGen	2
radiant.model	1
zelusutils	1
leaflegend	1
modeltime.ensemble	1
teal.reporter	1
GastrographPackage	1
CopyhelpeR	1
aneufinderdata	1
genomationData	1
Boom	1
relsurv	1
fable	1
adjustedCurves	1
d3treeR	1
minfiData	1
mlr3viz	1
spocc	1
BPSC	1
scImpute	1
argusDS.database	1
assertive.datetimes	1
sceptre	1
jskm	1
GOdb	1
HSAUR	1
consensusClustR	1
dynsbm	1
glmperm	1
argusDS.signal.dataprep	1
FSA	1
randomcolor	1
iRanges	1
censored	1
gdsx	1
roleswitch	1
faahKO	1
unrtf	1
BE	1
ggdensity	1
audited	1
ghpm	1
hydroPSO	1
logrrr	1
rnaturalearthdata	1
faux	1
renderthis	1
santoku	1
tidypredict	1
pdist	1
MCMCprecision	1
themeSanofi	1
rayimage	1
chanmetab	1
patch	1
wrapr	1
geobr	1
olsrr	1
distory	1
monocle3	1
rlistings	1
54vectors	0
NetBID2	0
ggsankey	1
rubasic	1
coastr	1
Shinyusagelogr	1
digitalDLSorteR	1
rmassbank	0
transmogR	3
fExtremes	4
knowYourCG	2
VisiumIO	4
SurfR	2
ggedit	1
safeBinaryRegression	1
openeo	1
radiant	1
aditools	1
argusDS.smoothers	1
SpaceMarkers	2
biotools	1
limpca	1
MatrixExtra	1
pasilla	1
geojsonlint	1
SpatialEpi	1
HaploBlocker	1
outliers	1
FlowSorted.Blood.450k	1
DALEX	1
breakpointRdata	1
caretEnsemble	1
mlr3tuningspaces	1
swamp	1
dotplot	1
SAVER	1
sdtmchecks	1
RDCOMClient	1
bsts	1
ifultools	1
prompter	1
ELMER.data	1
latentnet	1
lpridge	1
pedigreemm	1
refund	1
ingredients	1
DiurnalMRI	1
installr	1
ipw	1
survMS	1
InformationValue	1
MKmisc	1
iNEXT	1
monkey	1
eulerr	1
zli	1
GAMBLR.results	1
variantannotation	1
msatR	1
tsibbledata	1
DataExplorer	1
cronR	1
SCENIC	1
forestmodel	1
shinyauthr	1
dwrPlus	1
satchel	1
nestedcv	1
lbaQcCheck	1
SeuratWrapper	1
argusDS.trading.optimization	1
tibbke	1
greekLetters	1
rayvertex	1
uqot	1
tidyproteomics	0
interactomes	1
Rspectra	1
pipebind	0
oricvis	1
QCvis	1
ggrap2	1
argusDS.S3	1
motifTestR	2
gypsum	79
sketchR	3
txdbmaker	76
CaMutQC	2
smartid	2
ginmappeR	2
MIRit	3
dinoR	3
dar	4
tidyCoverage	3
mobileRNA	4
bettr	3
misty	1
synapser	1
UCSC.utils	499
GSEAbase	1
rbiopaxparser	1
systempiper	1
basemaps	1
rasterVis	1
hypred	1
nls2	1
pwalign	78
RProtoBuf	1
clusterexperiment	1
ideoviz	1
chipseeker	1
karyoploter	1
Synth	1
mosaic	1
haplotrackR	1
aneufinder	1
geneoverlap	1
DecisionCurve	1
snpar	1
usdm	1
teal.code	1
shinipsum	1
rbioinfcookbook	1
sleuth	1
synbreed	1
genetics	1
iptmnetr	1
date	1
rattle	1
PRISMselector	1
kyotil	1
epiregulon	2
HicAggR	2
MendelianRandomization	1
argusDS.UI	1
SpotSweeper	2
GAMBoost	1
tornado	1
simr	1
ResourceSelection	1
NACHO	1
taxonomizr	1
BiplotML	1
dlm	1
httptest2	1
ssh	1
graphiQs	1
preprocessorCore	1
ergm.multi	1
SCopeLoomR	1
markovchain	1
metrumrg	1
PKPDdatasets	1
SASxport	1
signac	1
ruODK	1
protti	1
fido	1
rspm	1
VAM	1
teal.builder.modules	1
rsparkling	1
bettermc	0
fastqcr	1
argusDS.model.validation	1
pinfsc50	1
tsoutliers	1
patientProfilesVis	1
tern.mmrm	1
tidySpatialExperiment	4
spoon	2
DegCre	2
teal.slice	1
SimInf	1
assertive.data.us	1
assertive.code	1
BioBase	1
teal.logger	1
gINTomics	1
scMultiSim	2
findIPs	2
dnet	1
protViz	1
deeptime	1
macrophage	1
bestglm	1
qicharts	1
biscuiteerData	1
zingeR	1
nanoarrow	1
rmapshaper	1
funkyheatmap	1
noctua	1
hypergate	1
vimp	1
sctrnasform	1
TauStar	1
genomicalignments	1
slopeR	1
MAPFX	1
multistateQTL	2
Rcmdr	1
fairhub.r.client	1
rlaR	1
battenberg	1
microeco	0
hdf4r	0
SmartEDA	1
PathInterpolatR	1
prestor	1
scGSVA	1
SPP	1
freetypeharfbuzz	1
pkgpub	1
ROI.plugin.glpk	1
rstanemax	1
XLConnectJars	1
shiny.semantic	1
genetclassifier	1
S4vectors	1
BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major	0
spp	1
rcpp	1
oncomarkerbase	1
teal.modules.sanofi	1
clariomdhumancdf	1
cols4all	1
dblplyr	1
rankprod	0
mma	1
crisprShiny	3
rawDiag	2
tidyomics	3
l2p	1
gmthemes	1
gamlss.add	1
ore	1
NCmisc	1
tabulizerjars	1
adductData	1
structuralvariantannotation	1
kutils	1
gageData	1
ITALICSData	1
bkbutils	1
regress	1
assertive.data	1
assertive.data.uk	1
tidyHeatmap	1
EMVS	1
RISCA	1
modetest	1
powsimR	1
reader	1
Rlabkey	1
fastmatrix	1
NORMT3	1
mhsmm	1
utilsStuff	1
iatlasGraphQLClient	1
teal.data	1
mycor	1
loupeR	1
metpath	1
pkglite	1
RNAmodR.Data	1
broomExtra	1
BayesPostEst	1
presser	1
parquetize	1
hdf5	0
aricode	1
ptw	1
deconfectHelpers	0
tiledb	1
V.PhyloMaker2	1
OptiLCMS	1
rusinglecell	1
pbv	1
immunarch	1
argusDS.gamboostLSS	1
mixture	1
VariantWarehouseBMS	1
Pedixplorer	3
simPIC	3
faers	3
MGnifyR	2
scMitoMut	3
HybridExpress	3
DeProViR	3
parcats	1
Rfast2	1
rvertnet	1
WorldFlora	1
stdmchecks	1
refinr	1
assertive.reflection	1
tabulizer	1
text2vec	1
coverageview	1
SCtools	1
mvpart	1
BoomSpikeSlab	1
JBrowseR	1
altair	1
choroplethr	1
mosaicData	1
ROSE	1
berryFunctions	1
tidydr	1
DECENT	1
TimeProjection	1
XIFF	1
rsatscan	1
ProgMan	1
MBESS	1
od	1
maditr	1
gausscov	1
schoolmath	1
SingleCellAlleleExperiment	2
OlinkAnalyze	1
readJDX	1
genomicRanges	1
PupillometryR	1
tuneRanger	1
QuantPsyc	0
dismo	0
tsibble	1
taskscheduleR	1
eq5d	1
excelR	1
paquet	1
nlmeODE	1
neo2R	1
ComplexUpset	1
Biostring	1
SeuratData	1
svMisc	1
rayrender	1
R2GUESS	1
envalysis	1
valr	0
velocyto.R	1
godmode	1
ufs	1
spatsurv	1