* using log directory 'd:/Rcompile/CRANpkg/local/4.1/gcplyr.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'gcplyr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gcplyr' version '1.5.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gcplyr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [2s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [28s] ERROR
  Running 'testthat.R' [28s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(gcplyr)
  ## 
  ## gcplyr (Version 1.5.1, Build Date: 2023-04-14)
  ## See http://github.com/mikeblazanin/gcplyr for additional documentation
  ## Please cite software as:
  ##   Blazanin, Michael. 2023. 'gcplyr: manipulate and analyze growth
  ##   curve data.' R package version 1.5.1
  ## 
  
  > 
  > test_check("gcplyr")
  
  Attaching package: 'dplyr'
  
  The following object is masked from 'package:testthat':
  
      matches
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  Inferring nested_metadata to be TRUE
  
  Inferring nested_metadata to be TRUE
  
  Inferring nested_metadata to be TRUE
  
  Inferring nested_metadata to be TRUE
  
  block_name_location = 'filename' but there are multiple metadata entries.
  Putting block_names in filename and writing remaining metadata into file
  
  block_name_location = 'filename' but there are multiple metadata entries.
  Putting block_names in filename and writing remaining metadata into file
  
  block_name_location = 'filename' but there are multiple metadata entries.
  Putting block_names in filename and writing remaining metadata into file
  
  Inferring nested_metadata to be FALSE
  
  Inferring nested_metadata to be FALSE
  
  Inferring nested_metadata to be FALSE
  
  Inferring nested_metadata to be FALSE
  
  Inferring nested_metadata to be TRUE
  
  Joining with `by = join_by(time, Pop1, run)`
  Joining with `by = join_by(time, Pop1, run)`
  Joining with `by = join_by(time, fake_treat, run)`
  Joining with `by = join_by(time, run)`
  Loading required package: nlme
  
  Attaching package: 'nlme'
  
  The following object is masked from 'package:dplyr':
  
      collapse
  
  This is mgcv 1.8-42. For overview type 'help("mgcv-package")'.
  [ FAIL 3 | WARN 0 | SKIP 1 | PASS 253 ]
  
  == Skipped tests ===============================================================
  * empty test (1)
  
  == Failed tests ================================================================
  -- Error ('test_allfunctions_argumentsmatching.R:30:3'): all functions included in gcplyr_function_subfunction_calls.csv --
  Error in `order(unique(myfile$gcplyr_func))`: argument 1 is not a vector
  Backtrace:
      x
   1. +-testthat::expect_equal(...) at test_allfunctions_argumentsmatching.R:30:2
   2. | \-testthat::quasi_label(enquo(expected), expected.label, arg = "expected")
   3. |   \-rlang::eval_bare(expr, quo_get_env(quo))
   4. \-base::order(unique(myfile$gcplyr_func))
  -- Error ('test_allfunctions_argumentsmatching.R:54:7'): all full arg matches have been checked --
  Error in `get(calls$gcplyr_func[i])`: invalid first argument
  Backtrace:
      x
   1. \-base::get(calls$gcplyr_func[i]) at test_allfunctions_argumentsmatching.R:54:6
  -- Error ('test_allfunctions_argumentsmatching.R:117:7'): all partial arg matches have been checked --
  Error in `get(calls$gcplyr_func[i])`: invalid first argument
  Backtrace:
      x
   1. \-base::get(calls$gcplyr_func[i]) at test_allfunctions_argumentsmatching.R:117:6
  
  [ FAIL 3 | WARN 0 | SKIP 1 | PASS 253 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [144s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR