* using log directory 'd:/Rcompile/CRANpkg/local/4.1/immunarch.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'immunarch/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'immunarch' version '0.9.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'immunarch' can be installed ... OK * checking installed package size ... NOTE installed size is 8.4Mb sub-directories of 1Mb or more: data 3.2Mb doc 1.6Mb libs 2.0Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [39s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [65s] ERROR Running examples in 'immunarch-Ex.R' failed The error most likely occurred in: > ### Name: repLoad > ### Title: Load immune repertoire files into the R workspace > ### Aliases: repLoad > > ### ** Examples > > # To load the data from a single file (note that you don't need to specify the data format): > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/Sample1.tsv.gz") > immdata <- repLoad(file_path) == Step 1/3: loading repertoire files... == Processing "" ... -- [1/1] Parsing "D:/temp/RtmpwFqJz7/RLIBS_12d3072edac2/immunarch/extdata/io/Sample1.tsv.gz" -- immunarch == Step 2/3: checking metadata files and merging files... == Processing "" ... -- Metadata file not found; creating a dummy metadata... == Step 3/3: processing paired chain data... == Done! > > # Suppose you have a following structure in your folder: > # >_ ls > # immunoseq1.txt > # immunoseq2.txt > # immunoseq3.txt > # metadata.txt > > # To load the whole folder with every file in it type: > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/") > immdata <- repLoad(file_path) == Step 1/3: loading repertoire files... == Error in .split_to_batches(.path, "") : Input file or directory not found: D:/temp/RtmpwFqJz7/RLIBS_12d3072edac2/immunarch/extdata/io/ Calls: repLoad -> .split_to_batches Execution halted ** running examples for arch 'x64' ... [72s] ERROR Running examples in 'immunarch-Ex.R' failed The error most likely occurred in: > ### Name: repLoad > ### Title: Load immune repertoire files into the R workspace > ### Aliases: repLoad > > ### ** Examples > > # To load the data from a single file (note that you don't need to specify the data format): > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/Sample1.tsv.gz") > immdata <- repLoad(file_path) == Step 1/3: loading repertoire files... == Processing "" ... -- [1/1] Parsing "D:/temp/RtmpwFqJz7/RLIBS_12d3072edac2/immunarch/extdata/io/Sample1.tsv.gz" -- immunarch == Step 2/3: checking metadata files and merging files... == Processing "" ... -- Metadata file not found; creating a dummy metadata... == Step 3/3: processing paired chain data... == Done! > > # Suppose you have a following structure in your folder: > # >_ ls > # immunoseq1.txt > # immunoseq2.txt > # immunoseq3.txt > # metadata.txt > > # To load the whole folder with every file in it type: > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/") > immdata <- repLoad(file_path) == Step 1/3: loading repertoire files... == Error in .split_to_batches(.path, "") : Input file or directory not found: D:/temp/RtmpwFqJz7/RLIBS_12d3072edac2/immunarch/extdata/io/ Calls: repLoad -> .split_to_batches Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [16s] OK * checking PDF version of manual ... OK * DONE Status: 2 ERRORs, 1 NOTE