* using log directory 'd:/Rcompile/CRANpkg/local/4.1/stars.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'stars/DESCRIPTION' ... OK * this is package 'stars' version '0.6-1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'starsdata' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'stars' can be installed ... OK * checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: doc 2.4Mb nc 1.7Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [35s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [46s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [166s] OK Running 'aggregate.R' [15s] Comparing 'aggregate.Rout' to 'aggregate.Rout.save' ...4c4 < Linking to GEOS 3.10.2, GDAL 3.4.1, PROJ 7.2.1; sf_use_s2() is TRUE --- > Linking to GEOS 3.11.1, GDAL 3.6.2, PROJ 9.1.1; sf_use_s2() is TRUE Running 'align.R' [4s] Comparing 'align.Rout' to 'align.Rout.save' ... OK Running 'area.R' [3s] Comparing 'area.Rout' to 'area.Rout.save' ...51a52,64 > /PRODUCT/longitude, > /PRODUCT/latitude, > /PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column, > stars object with 2 dimensions and 1 attribute > attribute(s): > Min. 1st Qu. Median Mean 3rd Qu. Max. > area [m^2] 64503163 64957713 65834712 65849060 66734597 67218777 > dimension(s): > from to refsys values x/y > x 1 5 WGS 84 [5x5] -5.81066 [°],...,-5.26234 [°] [x] > y 1 5 WGS 84 [5x5] 44.4439 [°],...,44.8693 [°] [y] > curvilinear grid > There were 15 warnings (use warnings() to see them) Running 'crop.R' [5s] Comparing 'crop.Rout' to 'crop.Rout.save' ... OK Running 'curvilinear.R' [2s] Comparing 'curvilinear.Rout' to 'curvilinear.Rout.save' ...54a55,70 > /PRODUCT/longitude, > /PRODUCT/latitude, > /PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column, > stars object with 3 dimensions and 1 attribute > attribute(s): > Min. 1st Qu. Median > nitrogendioxide_summed_total_c... 3.650813e-05 7.451281e-05 8.296968e-05 > Mean 3rd Qu. Max. NA's > nitrogendioxide_summed_total_c... 8.581399e-05 9.397442e-05 0.0004535302 330 > dimension(s): > from to refsys values x/y > x 1 450 WGS 84 [450x278] -5.81066 [°],...,30.9468 [°] [x] > y 1 278 WGS 84 [450x278] 28.3605 [°],...,51.4686 [°] [y] > time 1 1 NA NULL > curvilinear grid > There were 15 warnings (use warnings() to see them) Running 'datasets.R' [3s] Comparing 'datasets.Rout' to 'datasets.Rout.save' ...29a30,38 > stars_proxy object with 1 attribute in 1 file(s): > $`MTD_MSIL1C.xml:10m:EPSG_32632` > [1] "[...]/MTD_MSIL1C.xml:10m:EPSG_32632" > > dimension(s): > from to offset delta refsys values x/y > x 1 10980 3e+05 10 WGS 84 / UTM zone 32N NULL [x] > y 1 10980 6e+06 -10 WGS 84 / UTM zone 32N NULL [y] > band 1 4 NA NA NA B4,...,B8 Running 'dimensions.R' [4s] Comparing 'dimensions.Rout' to 'dimensions.Rout.save' ... OK Running 'ee.R' [3s] Comparing 'ee.Rout' to 'ee.Rout.save' ...6c6 < Linking to GEOS 3.10.2, GDAL 3.4.1, PROJ 7.2.1; sf_use_s2() is TRUE --- > Linking to GEOS 3.11.1, GDAL 3.6.2, PROJ 9.1.1; sf_use_s2() is TRUE Running 'extract.R' [3s] Comparing 'extract.Rout' to 'extract.Rout.save' ... OK Running 'gridtypes.R' [3s] Comparing 'gridtypes.Rout' to 'gridtypes.Rout.save' ... OK Running 'mdim.R' [3s] Comparing 'mdim.Rout' to 'mdim.Rout.save' ... OK Running 'nc.R' [4s] Comparing 'nc.Rout' to 'nc.Rout.save' ... OK Running 'plot.R' [5s] Comparing 'plot.Rout' to 'plot.Rout.save' ... OK Running 'predict.R' [9s] Comparing 'predict.Rout' to 'predict.Rout.save' ... OK Running 'proxy.R' [7s] Comparing 'proxy.Rout' to 'proxy.Rout.save' ... OK Running 'raster.R' [16s] Comparing 'raster.Rout' to 'raster.Rout.save' ... OK Running 'rasterize.R' [5s] Comparing 'rasterize.Rout' to 'rasterize.Rout.save' ... OK Running 'rectilinear.R' [4s] Comparing 'rectilinear.Rout' to 'rectilinear.Rout.save' ... OK Running 'redimension.R' [3s] Comparing 'redimension.Rout' to 'redimension.Rout.save' ... OK Running 'sf.R' [4s] Comparing 'sf.Rout' to 'sf.Rout.save' ... OK Running 'sp.R' [4s] Comparing 'sp.Rout' to 'sp.Rout.save' ... OK Running 'spacetime.R' [5s] Comparing 'spacetime.Rout' to 'spacetime.Rout.save' ...315a316,332 > > ################################### WARNING ################################### > # We noticed you have dplyr installed. The dplyr lag() function breaks how # > # base R's lag() function is supposed to work, which breaks lag(my_xts). # > # # > # If you call library(dplyr) later in this session, then calls to lag(my_xts) # > # that you enter or source() into this session won't work correctly. # > # # > # All package code is unaffected because it is protected by the R namespace # > # mechanism. # > # # > # Set `options(xts.warn_dplyr_breaks_lag = FALSE)` to suppress this warning. # > # # > # You can use stats::lag() to make sure you're not using dplyr::lag(), or you # > # can add conflictRules('dplyr', exclude = 'lag') to your .Rprofile to stop # > # dplyr from breaking base R's lag() function. # > ################################### WARNING ################################### Running 'spatstat.R' [6s] Comparing 'spatstat.Rout' to 'spatstat.Rout.save' ... OK Running 'stars.R' [15s] Comparing 'stars.Rout' to 'stars.Rout.save' ...248a249,289 > stars object with 3 dimensions and 1 attribute > attribute(s): > Min. 1st Qu. Median Mean 3rd Qu. Max. > tos_O1_2001-2002.nc [K] 271.1709 275.0928 285.4899 286.6974 299.0914 305.5038 > NA's > tos_O1_2001-2002.nc [K] 228240 > dimension(s): > from to offset delta refsys x/y > x 1 180 0 2 NA [x] > y 1 170 90 -1 NA [y] > time 1 24 2001-01-16 30 days PCICt > xmin ymin xmax ymax > 0 -80 360 90 > xmin ymin xmax ymax > 0.00000 -80.06943 360.54719 90.00000 > xmin ymin xmax ymax > 0.0000 -79.0976 359.5754 90.0000 > xmin ymin xmax ymax > 0.00000 -80.06943 360.54719 90.00000 > xmin ymin xmax ymax > 0 -80 360 90 > [1] TRUE > xmin ymin xmax ymax > 0 -80 360 90 > xmin ymin xmax ymax > 0 -90 360 90 > [1] TRUE > udunits database from D:/RCompile/CRANpkg/lib/4.3/units/share/udunits/udunits2.xml > stars object with 3 dimensions and 1 attribute > attribute(s): > Min. 1st Qu. Median Mean 3rd Qu. Max. > tos_O1_2001-2002.nc 271.1709 275.0928 285.4899 286.6974 299.0914 305.5038 > NA's > tos_O1_2001-2002.nc 228240 > dimension(s): > from to offset delta refsys x/y > x 1 180 0 2 NA [x] > y 1 170 90 -1 NA [y] > time 1 24 2001-01-16 30 days PCICt > [1] "x" "y" "time" > [1] "a" "b" "c" 268,270c309,311 < sst [C] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 < anom [C] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 < err [C] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 --- > sst [°C] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 > anom [°C] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 > err [°C] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 Running 'subset.R' [4s] Comparing 'subset.Rout' to 'subset.Rout.save' ... OK Running 'testthat.R' [16s] Comparing 'testthat.Rout' to 'testthat.Rout.save' ...9c9 < [ FAIL 0 | WARN 0 | SKIP 4 | PASS 69 ] --- > [ FAIL 0 | WARN 0 | SKIP 4 | PASS 74 ] 11,12c11,12 < == Skipped tests =============================================================== < * On CRAN (4) --- > ══ Skipped tests ═══════════════════════════════════════════════════════════════ > • On CRAN (4) 14c14 < [ FAIL 0 | WARN 0 | SKIP 4 | PASS 69 ] --- > [ FAIL 0 | WARN 0 | SKIP 4 | PASS 74 ] Running 'tidy.R' [4s] Comparing 'tidy.Rout' to 'tidy.Rout.save' ...49c49 < L7_ETMs.tif [C] -184 -19 -8 -10.2353 0 131 --- > L7_ETMs.tif [°C] -184 -19 -8 -10.2353 0 131 Running 'transform.R' [3s] Comparing 'transform.Rout' to 'transform.Rout.save' ...5,7c5,9 < Warning message: < In fun(libname, pkgname) : < GEOS versions differ: lwgeom has 3.9.1 sf has 3.10.2 --- > Warning messages: > 1: In fun(libname, pkgname) : > GEOS versions differ: lwgeom has 3.9.1 sf has 3.11.1 > 2: In fun(libname, pkgname) : > PROJ versions differ: lwgeom has 7.2.1 sf has 9.1.1 Running 'warp.R' [3s] Comparing 'warp.Rout' to 'warp.Rout.save' ... OK Running 'write.R' [3s] Comparing 'write.Rout' to 'write.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [77s] OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs