* using log directory 'd:/Rcompile/CRANpkg/local/4.2/biosurvey.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* checking for file 'biosurvey/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'biosurvey' version '0.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biosurvey' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [38s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [24s] ERROR
Running examples in 'biosurvey-Ex.R' failed
The error most likely occurred in:

> ### Name: grid_from_region
> ### Title: Creates grid for a given geographic region
> ### Aliases: grid_from_region
> 
> ### ** Examples
> 
> # Data
> data("mx", package = "biosurvey")
> 
> # Create grid from polygon
> grid_reg <- grid_from_region(region = mx, cell_size = 100)
Warning in sp::CRS("+init=epsg:4326") :
  sf required for evolution_status==2L
Warning in spTransform(xSP, CRSobj, ...) :
  NULL target CRS comment, falling back to PROJ string
Warning in spTransform(xSP, CRSobj, ...) : +init dropped in PROJ string
Warning in is.projected(p4str) : Package sf not available
proj_create: unrecognized format / unknown name
Error in .spTransform_Polygon(input[[i]], to_args = to_args, from_args = from_args,  : 
  target crs creation failed: Unknown error (code 4096)
Calls: grid_from_region ... spTransform -> .spTransform_Polygons -> .spTransform_Polygon
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [37s] ERROR
  Running 'testthat.R' [37s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(biosurvey)
  The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,
  which was just loaded, will retire in October 2023.
  Please refer to R-spatial evolution reports for details, especially
  https://r-spatial.org/r/2023/05/15/evolution4.html.
  It may be desirable to make the sf package available;
  package maintainers should consider adding sf to Suggests:.
  The sp package is now running under evolution status 2
       (status 2 uses the sf package in place of rgdal)
  Please note that rgdal will be retired during October 2023,
  plan transition to sf/stars/terra functions using GDAL and PROJ
  at your earliest convenience.
  See https://r-spatial.org/r/2023/05/15/evolution4.html and https://github.com/r-spatial/evolution
  rgdal: version: 1.6-7, (SVN revision 1203)
  Geospatial Data Abstraction Library extensions to R successfully loaded
  Loaded GDAL runtime: GDAL 3.5.2, released 2022/09/02
  Path to GDAL shared files: D:/RCompile/CRANpkg/lib/4.2/rgdal/gdal
  GDAL binary built with GEOS: TRUE 
  Loaded PROJ runtime: Rel. 8.2.1, January 1st, 2022, [PJ_VERSION: 821]
  Path to PROJ shared files: D:/RCompile/CRANpkg/lib/4.2/rgdal/proj
  PROJ CDN enabled: FALSE
  Linking to sp version:2.0-0
  To mute warnings of possible GDAL/OSR exportToProj4() degradation,
  use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
  rgeos version: 0.6-3, (SVN revision 696)
   GEOS runtime version: 3.9.3-CAPI-1.14.3 
   Please note that rgeos will be retired during October 2023,
  plan transition to sf or terra functions using GEOS at your earliest convenience.
  See https://r-spatial.org/r/2023/05/15/evolution4.html for details.
   GEOS using OverlayNG
   Linking to sp version: 2.0-0 
   Polygon checking: TRUE 
  
  > 
  > test_check("biosurvey")
  proj_create: unrecognized format / unknown name
  proj_create: unrecognized format / unknown name
  proj_create: unrecognized format / unknown name
  proj_create: unrecognized format / unknown name
  proj_create: unrecognized format / unknown name
  
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  proj_create: unrecognized format / unknown name
  proj_create: unrecognized format / unknown name
  proj_create: unrecognized format / unknown name
  proj_create: unrecognized format / unknown name
  proj_create: unrecognized format / unknown name
  proj_create: unrecognized format / unknown name
  proj_create: unrecognized format / unknown name
  [ FAIL 10 | WARN 56 | SKIP 0 | PASS 208 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-grid_from_region.R:4:3'): SPDF grid was produced successfully ──
  Error in `.spTransform_Polygon(input[[i]], to_args = to_args, from_args = from_args, 
      ii = ii, jj = i, use_ob_tran = use_ob_tran, coordOp = coordOp, 
      enforce_xy = enforce_xy, aoi = aoi)`: target crs creation failed: Unknown error (code 4096)
  Backtrace:
      ▆
   1. └─biosurvey::grid_from_region(mx, 200) at test-grid_from_region.R:4:2
   2.   ├─sp::spTransform(region, WGS84)
   3.   └─sp::spTransform(region, WGS84)
   4.     ├─sp::spTransform(xSP, CRSobj, ...)
   5.     └─rgdal (local) spTransform(xSP, CRSobj, ...)
   6.       └─rgdal:::.spTransform_Polygons(...)
   7.         └─rgdal:::.spTransform_Polygon(...)
  ── Error ('test-grid_from_region.R:20:3'): Errors and messages gfr ─────────────
  Error in `.spTransform_Polygon(input[[i]], to_args = to_args, from_args = from_args, 
      ii = ii, jj = i, use_ob_tran = use_ob_tran, coordOp = coordOp, 
      enforce_xy = enforce_xy, aoi = aoi)`: target crs creation failed: Unknown error (code 4096)
  Backtrace:
       ▆
    1. ├─testthat::expect_message(grid_from_region(mx, 1000, complete_cover = FALSE)) at test-grid_from_region.R:20:2
    2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─base::withCallingHandlers(...)
    5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    6. └─biosurvey::grid_from_region(mx, 1000, complete_cover = FALSE)
    7.   ├─sp::spTransform(region, WGS84)
    8.   └─sp::spTransform(region, WGS84)
    9.     ├─sp::spTransform(xSP, CRSobj, ...)
   10.     └─rgdal (local) spTransform(xSP, CRSobj, ...)
   11.       └─rgdal:::.spTransform_Polygons(...)
   12.         └─rgdal:::.spTransform_Polygon(...)
  ── Error ('test-helpers_spp_tables.R:30:3'): Correct spdf_2data ────────────────
  Error in `.spTransform_Polygon(input[[i]], to_args = to_args, from_args = from_args, 
      ii = ii, jj = i, use_ob_tran = use_ob_tran, coordOp = coordOp, 
      enforce_xy = enforce_xy, aoi = aoi)`: target crs creation failed: Unknown error (code 4096)
  Backtrace:
      ▆
   1. └─biosurvey::grid_from_region(region = mx, cell_size = 200) at test-helpers_spp_tables.R:30:2
   2.   ├─sp::spTransform(region, WGS84)
   3.   └─sp::spTransform(region, WGS84)
   4.     ├─sp::spTransform(xSP, CRSobj, ...)
   5.     └─rgdal (local) spTransform(xSP, CRSobj, ...)
   6.       └─rgdal:::.spTransform_Polygons(...)
   7.         └─rgdal:::.spTransform_Polygon(...)
  ── Error ('test-prepare_base_PAM.R:4:3'): Correct creation of base_PAM ─────────
  Error in `.spTransform_Polygon(input[[i]], to_args = to_args, from_args = from_args, 
      ii = ii, jj = i, use_ob_tran = use_ob_tran, coordOp = coordOp, 
      enforce_xy = enforce_xy, aoi = aoi)`: target crs creation failed: Unknown error (code 4096)
  Backtrace:
      ▆
   1. └─biosurvey::prepare_base_PAM(...) at test-prepare_base_PAM.R:4:2
   2.   └─biosurvey::grid_from_region(...)
   3.     ├─sp::spTransform(region, WGS84)
   4.     └─sp::spTransform(region, WGS84)
   5.       ├─sp::spTransform(xSP, CRSobj, ...)
   6.       └─rgdal (local) spTransform(xSP, CRSobj, ...)
   7.         └─rgdal:::.spTransform_Polygons(...)
   8.           └─rgdal:::.spTransform_Polygon(...)
  ── Error ('test-prepare_base_PAM.R:26:3'): Errors and messages base_PAM ────────
  Error in `.spTransform_Polygon(input[[i]], to_args = to_args, from_args = from_args, 
      ii = ii, jj = i, use_ob_tran = use_ob_tran, coordOp = coordOp, 
      enforce_xy = enforce_xy, aoi = aoi)`: target crs creation failed: Unknown error (code 4096)
  Backtrace:
       ▆
    1. ├─testthat::expect_message(...) at test-prepare_base_PAM.R:26:2
    2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─base::withCallingHandlers(...)
    5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    6. └─biosurvey::prepare_base_PAM(...)
    7.   └─biosurvey::grid_from_region(...)
    8.     ├─sp::spTransform(region, WGS84)
    9.     └─sp::spTransform(region, WGS84)
   10.       ├─sp::spTransform(xSP, CRSobj, ...)
   11.       └─rgdal (local) spTransform(xSP, CRSobj, ...)
   12.         └─rgdal:::.spTransform_Polygons(...)
   13.           └─rgdal:::.spTransform_Polygon(...)
  ── Error ('test-preselected_dist_mask.R:6:3'): Correct creation of mask ────────
  Error in `spTransform(xSP, CRSobj, ...)`: source crs creation failed: Unknown error (code 4096)
  Backtrace:
      ▆
   1. └─biosurvey::preselected_dist_mask(...) at test-preselected_dist_mask.R:6:2
   2.   └─biosurvey::point_thinning(...)
   3.     └─biosurvey::wgs84_2aed_laea(data, x_column, y_column, which = "ED")
   4.       ├─sp::spTransform(dat_s, prj)
   5.       └─sp::spTransform(dat_s, prj)
   6.         ├─sp::spTransform(xSP, CRSobj, ...)
   7.         └─rgdal (local) spTransform(xSP, CRSobj, ...)
  ── Error ('test-selection_helpers.R:7:3'): Correct point_thinning ──────────────
  Error in `spTransform(xSP, CRSobj, ...)`: source crs creation failed: Unknown error (code 4096)
  Backtrace:
      ▆
   1. └─biosurvey::point_thinning(...) at test-selection_helpers.R:7:2
   2.   └─biosurvey::wgs84_2aed_laea(data, x_column, y_column, which = "ED")
   3.     ├─sp::spTransform(dat_s, prj)
   4.     └─sp::spTransform(dat_s, prj)
   5.       ├─sp::spTransform(xSP, CRSobj, ...)
   6.       └─rgdal (local) spTransform(xSP, CRSobj, ...)
  ── Error ('test-short_helpers.R:17:3'): Errors wgs84_2aed_laea ─────────────────
  Error in `spTransform(xSP, CRSobj, ...)`: source crs creation failed: Unknown error (code 4096)
  Backtrace:
      ▆
   1. └─biosurvey::wgs84_2aed_laea(...) at test-short_helpers.R:17:2
   2.   ├─sp::spTransform(dat_s, prj)
   3.   └─sp::spTransform(dat_s, prj)
   4.     ├─sp::spTransform(xSP, CRSobj, ...)
   5.     └─rgdal (local) spTransform(xSP, CRSobj, ...)
  ── Error ('test-uniformG_selection.R:4:3'): Correct G master_selection ─────────
  Error in `spTransform(xSP, CRSobj, ...)`: source crs creation failed: Unknown error (code 4096)
  Backtrace:
      ▆
   1. └─biosurvey::uniformG_selection(...) at test-uniformG_selection.R:4:2
   2.   └─biosurvey::preselected_dist_mask(...)
   3.     └─biosurvey::point_thinning(...)
   4.       └─biosurvey::wgs84_2aed_laea(data, x_column, y_column, which = "ED")
   5.         ├─sp::spTransform(dat_s, prj)
   6.         └─sp::spTransform(dat_s, prj)
   7.           ├─sp::spTransform(xSP, CRSobj, ...)
   8.           └─rgdal (local) spTransform(xSP, CRSobj, ...)
  ── Error ('test-uniformG_selection.R:28:3'): Errors and messages G selection ───
  Error in `spTransform(xSP, CRSobj, ...)`: source crs creation failed: Unknown error (code 4096)
  Backtrace:
       ▆
    1. ├─testthat::expect_message(...) at test-uniformG_selection.R:28:2
    2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─base::withCallingHandlers(...)
    5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    6. └─biosurvey::uniformG_selection(...)
    7.   └─biosurvey::preselected_dist_mask(...)
    8.     └─biosurvey::point_thinning(...)
    9.       └─biosurvey::wgs84_2aed_laea(data, x_column, y_column, which = "ED")
   10.         ├─sp::spTransform(dat_s, prj)
   11.         └─sp::spTransform(dat_s, prj)
   12.           ├─sp::spTransform(xSP, CRSobj, ...)
   13.           └─rgdal (local) spTransform(xSP, CRSobj, ...)
  
  [ FAIL 10 | WARN 56 | SKIP 0 | PASS 208 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [10s] OK
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs