* using log directory 'd:/Rcompile/CRANpkg/local/4.5/MiMIR.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'MiMIR/DESCRIPTION' ... OK
* this is package 'MiMIR' version '1.5'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MiMIR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s] OK
* checking whether the package can be unloaded cleanly ... [4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s] OK
* checking whether the namespace can be unloaded cleanly ... [5s] OK
* checking loading without being on the library search path ... [4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [8s] ERROR
Running examples in 'MiMIR-Ex.R' failed
The error most likely occurred in:

> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: 'plotly'

The following object is masked from 'package:ggplot2':

    last_plot

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [11s] OK
* DONE
Status: 1 ERROR