* using log directory 'd:/Rcompile/CRANpkg/local/4.6/doremi.Rcheck' * using R Under development (unstable) (2025-08-02 r88493 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'doremi/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'doremi' version '1.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'doremi' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... NOTE Problems with news in 'NEWS.md': Cannot extract version info from the following section titles: New features * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [3s] OK * checking loading without being on the library search path ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) analyze.1order.Rd:49: Lost braces 49 | Although only the first derivative is used here, using a higher order can enhance derivative estimation (see \doi{10.1080/00273171.2015.1123138}{Chow et al.(2016)})} | ^ checkRd: (-1) analyze.2order.Rd:44: Lost braces 44 | 2 in second order differential equations), for instance, order=4 might enhance derivative estimation (see \doi{10.1080/00273171.2015.1123138}{Chow et al.(2016)})} | ^ checkRd: (-1) calculate.fda.Rd:29: Lost braces 29 | method described in several sources, such as in \doi{10.1007/b98888}{Ramsay et al. (2009)} | ^ checkRd: (-1) calculate.fda.Rd:30: Lost braces 30 | and \doi{10.1080/00273171.2015.1123138}{Chow et al. (2016)}. | ^ checkRd: (-1) calculate.glla.Rd:34: Lost braces 34 | described in \doi{10.4324/9780203864746}{Boker et al.(2010)}. | ^ checkRd: (-1) calculate.gold.Rd:33: Lost braces 33 | method described in \doi{10.1080/00273171.2010.498294}{Deboeck (2010)}. The code available on this paper was extracted and adapted for non constant time steps. | ^ checkRd: (-1) optimum_param.Rd:47: Lost braces 47 | Using a higher order can enhance derivative estimation (see \doi{10.1080/00273171.2015.1123138}{Chow et al.(2016)})} | ^ checkRd: (-1) rotation.Rd:37: Lost braces 37 | \doi{10.1016/j.yhbeh.2012.12.007}{(Courvoisier et al., 2013)}. | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [30s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [95s] OK * checking PDF version of manual ... Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: 17: 17 0.006834749 0.5845608 98.59598 57.63535 0.007902697 0.7791742 18: 18 0.005364987 0.5850556 86.11660 50.38300 0.009595186 0.8263048 19: 19 0.009654834 0.5836618 136.56879 79.70998 0.004842703 0.6613621 20: 20 0.011066521 0.5826983 169.18670 98.58481 0.001397762 0.2364827 21: 21 0.010362728 0.5840280 151.18477 88.29614 0.006280710 0.9495477 id gamma yeqgamma tau yeq load_kgamma load_k Derivative estimation method used ($dermethod): [1] "calculate.gold" Embedding number/smoothing parameter ($derparam): [1] 3 > > > > ### *