Bayesian Analysis of Generalized Linear Models with Historical Data

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Documentation for package ‘hdbayes’ version 0.2.0

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actg019 AIDS Clinical Trial ACTG019
actg036 AIDS Clinical Trial ACTG036
aft.bhm Posterior of Bayesian hierarchical model (BHM)
aft.commensurate Posterior of commensurate prior (CP)
aft.leap Posterior of latent exchangeability prior (LEAP)
aft.logml.commensurate Log marginal likelihood of an accelerated failure time (AFT) model under the commensurate prior (CP)
aft.logml.leap Log marginal likelihood of an accelerated failure time (AFT) model under latent exchangeability prior (LEAP)
aft.logml.map Log marginal likelihood of an accelerated failure time (AFT) model under the meta-analytic predictive (MAP) prior
aft.logml.npp Log marginal likelihood of an accelerated failure time (AFT) model under normalized power prior (NPP)
aft.logml.post Log marginal likelihood of an accelerated failure time (AFT) model under a normal/half-normal prior
aft.logml.pp Log marginal likelihood of an accelerated failure time (AFT) model under the power prior (PP)
aft.logml.stratified.pp Log marginal likelihood of an accelerated failure time (AFT) model under the stratified power prior (PP)
aft.npp Posterior of normalized power prior (NPP)
aft.npp.lognc Estimate the logarithm of the normalizing constant for normalized power prior (NPP) for one data set
aft.post Posterior of a normal/half-normal prior
aft.pp Posterior of power prior (PP) with fixed a_0
aft.stratified.pp Posterior of stratified power prior (PP) with fixed a_0
compute.ensemble.weights Compute model averaging weights
curepwe.bhm Posterior of Bayesian hierarchical model (BHM)
curepwe.commensurate Posterior of commensurate prior (CP)
curepwe.leap Posterior of latent exchangeability prior (LEAP)
curepwe.logml.commensurate Log marginal likelihood of a mixture cure rate (CurePWE) under the commensurate prior (CP)
curepwe.logml.leap Log marginal likelihood of a mixture cure rate (CurePWE) model under latent exchangeability prior (LEAP)
curepwe.logml.map Log marginal likelihood of a mixture cure rate (CurePWE) model under the meta-analytic predictive (MAP) prior
curepwe.logml.npp Log marginal likelihood of a mixture cure rate (CurePWE) model under normalized power prior (NPP)
curepwe.logml.post Log marginal likelihood of a mixture cure rate (CurePWE) model under a normal/half-normal prior
curepwe.logml.pp Log marginal likelihood of a standard cure rate (CurePWE) model under the power prior (PP)
curepwe.logml.stratified.pp Log marginal likelihood of a mixture cure rate (CurePWE) model under the stratified power prior (PP)
curepwe.npp Posterior of normalized power prior (NPP)
curepwe.npp.lognc Estimate the logarithm of the normalizing constant for normalized power prior (NPP) for one data set
curepwe.post Posterior of a normal/half-normal prior
curepwe.pp Posterior of power prior (PP) with fixed a_0
curepwe.stratified.pp Posterior of stratified power prior (PP) with fixed a_0
E1684 ECOG E1684 Trial
E1690 ECOG E1690 Trial
E1694 ECOG E1694 Trial
E2696 ECOG E2696 Trial
glm.bhm Posterior of Bayesian hierarchical model (BHM)
glm.commensurate Posterior of commensurate prior (CP)
glm.leap Posterior of latent exchangeability prior (LEAP)
glm.logml.commensurate Log marginal likelihood of a GLM under commensurate prior (CP)
glm.logml.leap Log marginal likelihood of a GLM under latent exchangeability prior (LEAP)
glm.logml.map Log marginal likelihood of a GLM under meta-analytic predictive (MAP) prior
glm.logml.napp Log marginal likelihood of a GLM under normalized asymptotic power prior (NAPP)
glm.logml.npp Log marginal likelihood of a GLM under normalized power prior (NPP)
glm.logml.post Log marginal likelihood of a GLM under a normal/half-normal prior
glm.logml.pp Log marginal likelihood of a GLM under power prior (PP)
glm.napp Posterior of normalized asymptotic power prior (NAPP)
glm.npp Posterior of normalized power prior (NPP)
glm.npp.lognc Estimate the logarithm of the normalizing constant for normalized power prior (NPP) for one data set
glm.post Posterior of a normal/half-normal prior
glm.pp Posterior of power prior (PP) with fixed a_0
glm.rmap Posterior of robust meta-analytic predictive prior (RMAP)
IBCSG_curr International Breast Cancer Study Group (IBCSG) Trial VI Data
IBCSG_hist International Breast Cancer Study Group (IBCSG) Trial VI Data
lm.npp Posterior of normalized power prior (NPP) for normal linear models
pwe.bhm Posterior of Bayesian hierarchical model (BHM)
pwe.commensurate Posterior of commensurate prior (CP)
pwe.leap Posterior of latent exchangeability prior (LEAP)
pwe.logml.commensurate Log marginal likelihood of a piecewise exponential (PWE) model under the commensurate prior (CP)
pwe.logml.leap Log marginal likelihood of a piecewise exponential (PWE) model under latent exchangeability prior (LEAP)
pwe.logml.map Log marginal likelihood of a piecewise exponential (PWE) model under the meta-analytic predictive (MAP) prior
pwe.logml.npp Log marginal likelihood of a piecewise exponential (PWE) model under normalized power prior (NPP)
pwe.logml.post Log marginal likelihood of a piecewise exponential (PWE) model under a normal/half-normal prior
pwe.logml.pp Log marginal likelihood of a piecewise exponential (PWE) model under the power prior (PP)
pwe.logml.stratified.pp Log marginal likelihood of a piecewise exponential (PWE) model under the stratified power prior (PP)
pwe.npp Posterior of normalized power prior (NPP)
pwe.npp.lognc Estimate the logarithm of the normalizing constant for normalized power prior (NPP) for one data set
pwe.post Posterior of a normal/half-normal prior
pwe.pp Posterior of power prior (PP) with fixed a_0
pwe.stratified.pp Posterior of stratified power prior (PP) with fixed a_0
sample.ensemble Sample from the ensemble posterior distribution