| sjSDM-package | Installation help | 
| AccSGD | AccSGD | 
| AdaBound | AdaBound | 
| Adamax | Adamax | 
| anova.sjSDM | Anova / Variation partitioning | 
| bioticStruct | biotic structure | 
| butterflies | butterflies | 
| checkModel | check model check model and rebuild if necessary | 
| check_module | check module | 
| coef.sjSDM | Return coefficients from a fitted sjSDM model | 
| DiffGrad | DiffGrad | 
| DNN | Non-linear model (deep neural network) of environmental responses | 
| eucalypts | eucalypts | 
| generateSpatialEV | Generate spatial eigenvectors | 
| getCor | getCor | 
| getCor.sjSDM | getCor | 
| getCov | getCov | 
| getCov.sjSDM | getCov | 
| getImportance | getImportance | 
| getSe | Post hoc calculation of standard errors | 
| getWeights | Get weights | 
| getWeights.sjSDM | Get weights | 
| importance | Importance of environmental, spatial and association components | 
| installation_help | Installation help | 
| install_diagnostic | install diagnostic | 
| install_sjSDM | Install sjSDM and its dependencies | 
| internalStructure | Plot internal metacommunity structure | 
| is_torch_available | is_torch_available | 
| linear | Linear model of environmental response | 
| logLik.sjSDM | Extract negative-log-Likelihood from a fitted sjSDM model | 
| madgrad | madgrad | 
| new_image | new_image function | 
| plot.sjSDM | Coefficients plot | 
| plot.sjSDM.DNN | Training history | 
| plot.sjSDManova | Plot anova results | 
| plot.sjSDMimportance | Plot importance | 
| plot.sjSDMinternalStructure | Plot internal structure | 
| plot.sjSDM_cv | Plot elastic net tuning | 
| plotAssemblyEffects | Plot predictors of assembly processes | 
| plotsjSDMcoef | Internal coefficients plot | 
| predict.sjSDM | Predict from a fitted sjSDM model | 
| print.bioticStruct | Print a bioticStruct object | 
| print.DNN | Print a DNN object | 
| print.linear | Print a linear object | 
| print.sjSDM | Print a fitted sjSDM model | 
| print.sjSDManova | Print sjSDM anova object | 
| print.sjSDMimportance | Print importance | 
| print.sjSDMinternalStructure | Print internal structure object | 
| print.sjSDM_cv | Print a fitted sjSDM_cv model | 
| residuals.sjSDM | Residuals for a sjSDM model | 
| RMSprop | RMSprop | 
| Rsquared | R-squared | 
| setWeights | Set weights | 
| setWeights.sjSDM | Set weights | 
| SGD | SGD | 
| simulate.sjSDM | Generates simulations from sjSDM model | 
| simulate_SDM | Simulate joint Species Distribution Models | 
| sjSDM | Fitting scalable joint Species Distribution Models (sjSDM) | 
| sjSDM.tune | Fitting scalable joint Species Distribution Models (sjSDM) | 
| sjSDMControl | sjSDM control object | 
| sjSDM_cv | Cross validation of elastic net tuning | 
| summary.sjSDM | Return summary of a fitted sjSDM model | 
| summary.sjSDManova | Summary table of sjSDM anova | 
| summary.sjSDM_cv | Return summary of a fitted sjSDM_cv model | 
| update.sjSDM | Update and re-fit a model call |