calc_k                  Calculate the limit of the number of junctions
calculate_mat           Function to calculate the maximum accurate time
estimate_time           Estimate the time since the onset of
                        hybridization, using the number of junctions
estimate_time_diploid   estimates the time since admixture, given
                        diploid ancestry data.
estimate_time_haploid   estimate time using likelihood for a single
                        chromosome
estimate_time_one_chrom
                        Estimate the time since the onset of
                        hybridization, using the observed number of
                        junctions, taking into account the distribution
                        of markers on a single chromosome
junctions-package       Extending The Theory of Junctions
log_likelihood_diploid
                        calculate the log likelihood of observing
                        diploid ancestry data.
log_likelihood_haploid
                        log likelihood of the time since admixture for
                        a haploid genome
number_of_junctions     Calculate the average number of junctions
number_of_junctions_backcross
                        Calculate the average number of junctions
                        during backcrossing
number_of_junctions_di
                        Calculate the expected number of junctions
                        between two markers separated by a given amount
                        of recombination
number_of_junctions_markers
                        Calculate the expected total number of
                        junctions in a chromosome, given the
                        distribution of markers
sim_backcrossing        Function to simulate data using a back crossing
                        scheme
sim_fin_chrom           Individual Based Simulation of the accumulation
                        of junctions
sim_inf_chrom           Individual Based Simulation of the accumulation
                        of junctions
sim_phased_unphased     Individual Based Simulation of the accumulation
                        of junctions
time_error              Estimate the error in the time estimate
