analyze.pgs.binary.predictiveness
                        Analyze PGS Predictiveness for Binary
                        Phenotypes
apply.polygenic.score   Apply polygenic score to VCF data
assess.pgs.vcf.allele.match
                        Assess PGS allele match to VCF allele
check.pgs.weight.columns
                        Check PGS weight file columns
combine.pgs.bed         Combine PGS BED files
combine.vcf.with.pgs    Combine VCF with PGS
convert.allele.frequency.to.dosage
                        Convert allele frequency to mean dosage
convert.alleles.to.pgs.dosage
                        Convert alleles to dosage
convert.pgs.to.bed      Convert PGS data to BED format
create.pgs.boxplot      Plot PGS Boxplots
create.pgs.density.plot
                        Plot PGS Density
create.pgs.rank.plot    Plot PGS Rank
create.pgs.with.continuous.phenotype.plot
                        Plot PGS Scatterplots
flip.DNA.allele         Flip DNA allele
format.chromosome.notation
                        Format chromosome names
get.pgs.percentiles     get.pgs.percentiles
import.pgs.weight.file
                        Import PGS weight file
import.vcf              Import VCF file
parse.pgs.input.header
                        Parse PGS input file header
run.pgs.regression      Run linear and logistic regression on a
                        polygenic score and a set of phenotypes
write.apply.polygenic.score.output.to.file
                        Write apply.polygenic.score output to file
