* using log directory 'd:/Rcompile/CRANpkg/local/4.4/ClassDiscovery.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'ClassDiscovery/DESCRIPTION' ... OK
* this is package 'ClassDiscovery' version '3.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ClassDiscovery' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) cd01-0-distanceMatrix.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cd01-0-distanceMatrix.Rd:40-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cd01-0-distanceMatrix.Rd:44-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cd01-0-distanceMatrix.Rd:47-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cd01-0-distanceMatrix.Rd:49-50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cd01-0-distanceMatrix.Rd:51-52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cd02-1-cluster3.Rd:25: Lost braces
    25 |   Kevin R. Coombes email{krc@silicovore.com}
       |                         ^
checkRd: (-1) cd03-0-ClusterTest-class.Rd:70: Lost braces
    70 |   Kevin R. Coombes email{krc@silicovore.com}
       |                         ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [6s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [16s] OK
  Running 'exprSet-example.R' [6s]
  Comparing 'exprSet-example.Rout' to 'exprSet-example.Rout.save' ... OK
  Running 'test00-color.R' [1s]
  Comparing 'test00-color.Rout' to 'test00-color.Rout.save' ... OK
  Running 'test01-distance.R' [1s]
  Comparing 'test01-distance.Rout' to 'test01-distance.Rout.save' ... OK
  Running 'test02-cluster.R' [1s]
  Comparing 'test02-cluster.Rout' to 'test02-cluster.Rout.save' ... OK
  Running 'test02.1-just.R' [0s]
  Comparing 'test02.1-just.Rout' to 'test02.1-just.Rout.save' ... OK
  Running 'test03-boot.R' [2s]
  Comparing 'test03-boot.Rout' to 'test03-boot.Rout.save' ... OK
  Running 'test04-perturb.R' [2s]
  Comparing 'test04-perturb.Rout' to 'test04-perturb.Rout.save' ... OK
  Running 'test04.1-gpca.R' [0s]
  Comparing 'test04.1-gpca.Rout' to 'test04.1-gpca.Rout.save' ... OK
  Running 'test05-spca.R' [1s]
  Comparing 'test05-spca.Rout' to 'test05-spca.Rout.save' ... OK
  Running 'test06-mosaic.R' [1s]
  Comparing 'test06-mosaic.Rout' to 'test06-mosaic.Rout.save' ... OK
  Running 'test07-pcanova.R' [1s]
  Comparing 'test07-pcanova.Rout' to 'test07-pcanova.Rout.save' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [37s] OK
* checking PDF version of manual ... [28s] OK
* checking HTML version of manual ... [4s] OK
* DONE
Status: 1 NOTE