* using log directory 'd:/Rcompile/CRANpkg/local/4.4/aghq.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86468 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'aghq/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'aghq' version '0.4.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'aghq' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) aghq.Rd:21-22: Lost braces in \itemize; meant \describe ? checkRd: (-1) aghq.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) aghq.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) aghq.Rd:61-69: Lost braces in \itemize; meant \describe ? checkRd: (-1) aghq.Rd:63: Lost braces in \itemize; meant \describe ? checkRd: (-1) aghq.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) aghq.Rd:65: Lost braces in \itemize; meant \describe ? checkRd: (-1) aghq.Rd:66: Lost braces in \itemize; meant \describe ? checkRd: (-1) aghq.Rd:70-71: Lost braces in \itemize; meant \describe ? checkRd: (-1) aghq.Rd:79-85: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) aghq.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) aghq.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) aghq.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) aghq.Rd:86-91: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) aghq.Rd:92-100: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) aghq.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) aghq.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) aghq.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) aghq.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) aghq.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) default_control.Rd:23-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_marglaplace.Rd:23-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_marglaplace.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_marglaplace.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_marglaplace.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_marglaplace.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_marglaplace.Rd:31-33: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_tmb.Rd:23-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_tmb.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_tmb.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_tmb.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_tmb.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) default_control_tmb.Rd:31-33: Lost braces 31 | \item \code{negate}: {default \code{TRUE}. Assumes that your \code{TMB} function | ^ checkRd: (-1) laplace_approximation.Rd:18-19: Lost braces in \itemize; meant \describe ? checkRd: (-1) laplace_approximation.Rd:20-21: Lost braces in \itemize; meant \describe ? checkRd: (-1) laplace_approximation.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) laplace_approximation.Rd:42-50: Lost braces in \itemize; meant \describe ? checkRd: (-1) laplace_approximation.Rd:44: Lost braces in \itemize; meant \describe ? checkRd: (-1) laplace_approximation.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) laplace_approximation.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) laplace_approximation.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) laplace_approximation.Rd:51-52: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace.Rd:53-59: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace.Rd:60-61: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace_tmb.Rd:58-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace_tmb.Rd:60: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace_tmb.Rd:61: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace_tmb.Rd:62: Lost braces in \itemize; meant \describe ? checkRd: (-1) marginal_laplace_tmb.Rd:65-67: Lost braces in \itemize; meant \describe ? checkRd: (-1) normalize_logpost.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) normalize_logpost.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) normalize_logpost.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) optimize_theta.Rd:12-13: Lost braces in \itemize; meant \describe ? checkRd: (-1) optimize_theta.Rd:14-15: Lost braces in \itemize; meant \describe ? checkRd: (-1) optimize_theta.Rd:16-17: Lost braces in \itemize; meant \describe ? checkRd: (-1) optimize_theta.Rd:29-37: Lost braces in \itemize; meant \describe ? checkRd: (-1) optimize_theta.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) optimize_theta.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) optimize_theta.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) optimize_theta.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) optimize_theta.Rd:38-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) optimize_theta.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) optimize_theta.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) optimize_theta.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) optimize_theta.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sample_marginal.Rd:60-61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sample_marginal.Rd:62-63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sample_marginal.Rd:64-65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary.aghq.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary.aghq.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary.aghq.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary.aghq.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary.aghq.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary.aghq.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary.aghq.Rd:24-26: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [8s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [27s] OK Running 'testthat.R' [27s] * checking PDF version of manual ... [33s] OK * checking HTML version of manual ... [9s] OK * DONE Status: 1 NOTE