* using log directory 'd:/Rcompile/CRANpkg/local/4.4/analogue.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'analogue/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'analogue' version '0.17-6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'analogue' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking whether startup messages can be suppressed ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s] OK
* checking Rd files ... [2s] NOTE
checkRd: (-1) cma.Rd:106-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cma.Rd:108-110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deshrink.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) deshrink.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) mat.Rd:162: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mat.Rd:163-164: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mat.Rd:165-168: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mat.Rd:175-179: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mat.Rd:180-181: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mat.Rd:182-183: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mat.Rd:184-186: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mat.Rd:187-188: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mat.Rd:189-190: Lost braces in \itemize; meant \describe ?
checkRd: (-1) performance.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) performance.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) performance.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) performance.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) performance.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mat.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) plot.wa.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) predict.mat.Rd:61-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:64-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:78-79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:82-83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:85-86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:87-88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:89-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:100-101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:113-114: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:115-118: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:119-121: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.mat.Rd:122-124: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.prcurve.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) scores.prcurve.Rd:35: Lost braces; missing escapes or markup?
    35 |   variables {columns} then the matrix returned by \code{scores.prcurve}
       |             ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [22s] OK
* checking differences from 'analogue-Ex.Rout' to 'analogue-Ex.Rout.save' ... OK

2c2
< This is vegan 2.6-4
---
> This is vegan 2.5-7
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [3s] OK
  Running 'test-all.R' [3s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [36s] OK
* checking PDF version of manual ... [27s] OK
* checking HTML version of manual ... [20s] OK
* DONE
Status: 1 NOTE