* using log directory 'd:/Rcompile/CRANpkg/local/4.4/basket.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86468 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'basket/DESCRIPTION' ... OK * this is package 'basket' version '0.10.11' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'basket' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:31: Lost braces 31 | \item{[text_color]}{A text string setting the color of the exchangeability | ^ checkRd: (-1) plot_pep.Rd:31-32: Lost braces 31 | \item{[text_color]}{A text string setting the color of the exchangeability | ^ checkRd: (-1) plot_pep.Rd:33: Lost braces 33 | \item{[tile_color]}{A text string setting the color of the edges of the | ^ checkRd: (-1) plot_pep.Rd:33-34: Lost braces 33 | \item{[tile_color]}{A text string setting the color of the edges of the | ^ checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ? checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup? 20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [3s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [76s] OK Running 'testthat.R' [76s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [6s] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [3s] OK * DONE Status: 1 NOTE