* using log directory 'd:/Rcompile/CRANpkg/local/4.4/causalPAF.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'causalPAF/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'causalPAF' version '1.2.5'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'causalPAF' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) eval_make_DAG.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_DAG.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eval_make_formula.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) indirect_PAF_Sjolander_onesimulation.Rd:65: Lost braces; missing escapes or markup?
    65 | \if{html}{\figure{CausalDAG.jpg} {options: width=100 alt="Causal Bayesian network DAG"} }
       |                                  ^
checkRd: (-1) path_specific_onesimulation.Rd:54: Lost braces; missing escapes or markup?
    54 | \if{html}{\figure{CausalDAG.jpg} {options: width=100 alt="Causal Bayesian network DAG"} }
       |                                  ^
checkRd: (-1) strokedata.Rd:49: Lost braces; missing escapes or markup?
    49 |              individual’s behaviour SB = {Smoking, Alcohol intake, inactivity, diet and stress},
       |                                          ^
checkRd: (-1) strokedata.Rd:50: Lost braces; missing escapes or markup?
    50 |              their physiology SP = {High blood pressure, ApoB/ApoA ratio, Waist hip ratio}
       |                                    ^
checkRd: (-1) strokedata.Rd:52: Lost braces; missing escapes or markup?
    52 |              SD = {Cardiac risk factors, Preclinical diabetes}.
       |                   ^
checkRd: (-1) strokedata.Rd:60: Lost braces; missing escapes or markup?
    60 |              {SC , SB , SP , SD , Y }, and summarized by the causal graphs in
       |              ^
checkRd: (-1) strokedata_smallSample.Rd:49: Lost braces; missing escapes or markup?
    49 |              individual’s behaviour SB = {Smoking, Alcohol intake, inactivity, diet and stress},
       |                                          ^
checkRd: (-1) strokedata_smallSample.Rd:50: Lost braces; missing escapes or markup?
    50 |              their physiology SP = {High blood pressure, ApoB/ApoA ratio, Waist hip ratio}
       |                                    ^
checkRd: (-1) strokedata_smallSample.Rd:52: Lost braces; missing escapes or markup?
    52 |              SD = {Cardiac risk factors, Pre clinical diabetes}.
       |                   ^
checkRd: (-1) strokedata_smallSample.Rd:60: Lost braces; missing escapes or markup?
    60 |              {SC , SB , SP , SD , Y }, and summarized by the causal graphs in
       |              ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [2s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [1s] OK
  Running 'spelling.R' [0s]
* checking PDF version of manual ... [24s] OK
* checking HTML version of manual ... [4s] OK
* DONE
Status: 1 NOTE