* using log directory 'd:/Rcompile/CRANpkg/local/4.4/dataone.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86468 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'dataone/DESCRIPTION' ... OK * this is package 'dataone' version '2.2.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'dataone' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s] OK * checking Rd files ... [2s] NOTE checkRd: (-1) AuthenticationManager-class.Rd:43: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:44: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:53: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) AuthenticationManager-class.Rd:61: Lost braces 61 | \code{\link{dataone}}{ package description.} | ^ checkRd: (-1) CNode-class.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) CNode-class.Rd:42: Lost braces 42 | \code{\link{dataone}}{ package description.} | ^ checkRd: (-1) CNode.Rd:36: Lost braces 36 | \code{\link[=CNode-class]{CNode}}{ class description.} | ^ checkRd: (-1) CertificateManager-class.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) CertificateManager-class.Rd:53: Lost braces in \itemize; meant \describe ? checkRd: (-1) CertificateManager-class.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) CertificateManager-class.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) CertificateManager-class.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) CertificateManager-class.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) CertificateManager-class.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) CertificateManager-class.Rd:59: Lost braces in \itemize; meant \describe ? checkRd: (-1) CertificateManager-class.Rd:75: Lost braces 75 | \code{\link{dataone}}{ package description.} | ^ checkRd: (-1) D1Client-class.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Client-class.Rd:41: Lost braces 41 | \code{\link{dataone}}{ package description.} | ^ checkRd: (-1) D1Client-initialize.Rd:37: Lost braces 37 | \code{\link[=D1Client-class]{dataone}}{ class description.} | ^ checkRd: (-1) D1Client.Rd:48: Lost braces 48 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) D1Node-class.Rd:44: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:53: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Node-class.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Object-class.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Object-class.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Object-class.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Object-class.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Object-class.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Object-class.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Object-class.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) D1Object-class.Rd:31: Lost braces 31 | \code{\link{dataone}}{ package description.} | ^ checkRd: (-1) D1Object-initialize.Rd:25: Lost braces 25 | \code{\link[=D1Object-class]{D1Object}}{ class description.} | ^ checkRd: (-1) D1Object.Rd:19: Lost braces 19 | \code{\link[=D1Object-class]{D1Object}}{ class description.} | ^ checkRd: (-1) MNode-class.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) MNode-class.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) MNode-class.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) MNode-class.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) MNode-class.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) MNode-class.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) MNode-class.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) MNode-class.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) MNode-class.Rd:73: Lost braces 73 | \code{\link{dataone}}{ package description.} | ^ checkRd: (-1) MNode.Rd:37: Lost braces 37 | \code{\link[=MNode-class]{MNode}}{ class description.} | ^ checkRd: (-1) archive.Rd:69: Lost braces 69 | \code{\link[=D1Node-class]{D1Node}}{ class description.} | ^ checkRd: (-1) convert.csv.Rd:33: Lost braces 33 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) createDataPackage.Rd:49: Lost braces 49 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) d1IdentifierSearch.Rd:34: Lost braces 34 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) d1SolrQuery.Rd:39: Lost braces 39 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) dataone-defunct.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:43: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:44: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-defunct.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-deprecated.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-deprecated.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-deprecated.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-deprecated.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-deprecated.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-deprecated.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-deprecated.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-deprecated.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone-deprecated.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) dataone.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) downloadObject.Rd:51: Lost braces 51 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) encodeUrlPath.Rd:34: Lost braces 34 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) encodeUrlQuery.Rd:34: Lost braces 34 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) getCN.Rd:28: Lost braces 28 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) getChecksum.Rd:48: Lost braces 48 | \code{\link{D1Node-class}{D1Node}}{ class description.} | ^ checkRd: (-1) getD1Object.Rd:35: Lost braces 35 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) getDataObject.Rd:77: Lost braces 77 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) getDataPackage.Rd:70: Lost braces 70 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) getEndpoint.Rd:33: Lost braces 33 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) getFormat.Rd:36: Lost braces 36 | \code{\link[=CNode-class]{CNode}}{ class description.} | ^ checkRd: (-1) getMN.Rd:35: Lost braces 35 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) getMNode.Rd:37: Lost braces 37 | \code{\link[=CNode-class]{CNode}}{ class description.} | ^ checkRd: (-1) getMNodeId.Rd:29: Lost braces 29 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) getObject.Rd:45: Lost braces 45 | \code{\link{D1Node-class}{D1Node}}{ class description.} | ^ checkRd: (-1) getPackage.Rd:52: Lost braces 52 | \code{\link[=MNode-class]{MNode}}{ class description.} | ^ checkRd: (-1) getSystemMetadata.Rd:57: Lost braces 57 | \code{\link[=CNode-class]{CNode}}{ class description.} | ^ checkRd: (-1) hasReservation.Rd:46: Lost braces 46 | \code{\link[=CNode-class]{CNode}}{ class description.} | ^ checkRd: (-1) isAuthorized.Rd:50: Lost braces 50 | \code{\link[=CNode-class]{CNode}}{ class description.} | ^ checkRd: (-1) listFormats.Rd:32: Lost braces 32 | \code{\link[=CNode-class]{CNode}}{ class description.} | ^ checkRd: (-1) listMemberNodes.Rd:26: Lost braces 26 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) listNodes.Rd:33: Lost braces 33 | \code{\link[=CNode-class]{CNode}}{ class description.} | ^ checkRd: (-1) reserveIdentifier.Rd:43: Lost braces 43 | \code{\link[=CNode-class]{CNode}}{ class description.} | ^ checkRd: (-1) setMNodeId.Rd:27: Lost braces 27 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) setObsoletedBy.Rd:33: Lost braces 33 | \code{\link[=CNode-class]{CNode}}{ class description.} | ^ checkRd: (-1) setPublicAccess.Rd:24: Lost braces 24 | \code{\link[=DataObject-class]{DataObject}}{ class description.} | ^ checkRd: (-1) uploadDataObject.Rd:61: Lost braces 61 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ checkRd: (-1) uploadDataPackage.Rd:88: Lost braces 88 | \code{\link[=D1Client-class]{D1Client}}{ class description.} | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [7s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [13s] OK Running 'testthat.R' [13s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [17s] OK * checking PDF version of manual ... [24s] OK * checking HTML version of manual ... [18s] OK * DONE Status: 1 NOTE