* using log directory 'd:/Rcompile/CRANpkg/local/4.4/hmmm.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'hmmm/DESCRIPTION' ... OK
* this is package 'hmmm' version '1.0-4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hmmm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) hmmm.model.Rd:45: Lost braces; missing escapes or markup?
    45 | with categories k_1, k_2, the joint frequencies y = {y_ij}, where i=1,...,k_1, j=1,...,k_2, 
       |                                                     ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [2s] ERROR
Running examples in 'hmmm-Ex.R' failed
The error most likely occurred in:

> ### Name: anova.hidden
> ### Title: anova for the class hidden
> ### Aliases: anova.hidden
> ### Keywords: package
> 
> ### ** Examples
> data(drinks)
> y<-cbind(drinks$lemon.tea,drinks$orange.juice)
> 
> f<-~lat*tea+lat*juice+tea*juice  # lat indicates the latent variable
> fm<-c("l-l-l")
> fmargobs<-marg.list(fm,mflag="m")
> Ptr<-matrix(c(0.941, 0.199,
+                0.059, 0.801),2,2,byrow=TRUE)
> Ptobs<-matrix(c(0.053, 0.215, 0.206, 0.001, 0.039, 0.021, 0.020, 0.176, 0.270,
+                 0.000, 0.000, 0.000, 0.048, 0.263, 0.360, 0.065, 0.053, 0.211)
+                 ,2,9,byrow=TRUE)
> 
> # saturated model (fsat<-~lat*tea*juice is implicit)
> model.obsf<-hmmm.model(marg=fmargobs,
+ lev=c(2,3,3),names=c("lat","tea","juice"))
> modelsat<-hidden.emfit(y,model.obsf,y.eps=0.01,maxit=10,
+ maxiter=2500,norm.diff.conv=0.001,old.tran.p=Ptr,bb=Ptobs)
Error in while (((norm.diff > norm.diff.conv) || (norm.score > norm.score.conv)) &  : 
  missing value where TRUE/FALSE needed
Calls: hidden.emfit -> hidden.emfit.S -> hmmm.mlfit -> mphineq.fit
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [59s] OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [6s] OK
* DONE
Status: 1 ERROR, 1 NOTE