* using log directory 'd:/Rcompile/CRANpkg/local/4.4/pcalg.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86468 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'pcalg/DESCRIPTION' ... OK * this is package 'pcalg' version '2.7-11' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'pcalg' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 13.2.0' * used C++ compiler: 'g++.exe (GCC) 13.2.0' * checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: data 2.1Mb libs 1.4Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [25s] OK * checking Rd files ... [3s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [33s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [121s] OK Running 'test_LINGAM.R' [2s] Running 'test_addBgKnowledge.R' [2s] Running 'test_adjustment.R' [3s] Running 'test_ages.R' [2s] Running 'test_amat2dag.R' [1s] Running 'test_arges.R' [2s] Running 'test_backdoor.R' [6s] Comparing 'test_backdoor.Rout' to 'test_backdoor.Rout.save' ... OK Running 'test_bicscore.R' [2s] Running 'test_causalEffect.R' [2s] Running 'test_coercion.R' [2s] Running 'test_compareGraphs.R' [2s] Running 'test_dag2cpdag.R' [2s] Running 'test_dag2essgraph.R' [2s] Running 'test_displayAmat.R' [2s] Running 'test_dsep.R' [2s] Running 'test_dsepAM.R' [2s] Running 'test_dsepAMTest.R' [2s] Running 'test_fci.R' [2s] Running 'test_fciPlus.R' [2s] Running 'test_gSquareBin.R' [2s] Running 'test_gSquareDis.R' [3s] Running 'test_gac.R' [3s] Running 'test_getNextSet.R' [1s] Running 'test_gies.R' [3s] Running 'test_ida.R' [7s] Running 'test_idaFast.R' [4s] Running 'test_isValidGraph.R' [3s] Running 'test_jointIda.R' [2s] Running 'test_mat2targets.R' [2s] Running 'test_optAdjSet.R' [2s] Running 'test_opttarget.R' [2s] Running 'test_pag2anc.R' [2s] Running 'test_pag2conf.R' [2s] Running 'test_pag2edge.R' [2s] Running 'test_pc.R' [3s] Running 'test_pcSelect.R' [3s] Running 'test_pcalg2dagitty.R' [2s] Running 'test_pcorOrder.R' [1s] Running 'test_pdag2allDags.R' [2s] Running 'test_pdag2dag.R' [2s] Running 'test_possDeAn.R' [2s] Running 'test_randDAG.R' [4s] Comparing 'test_randDAG.Rout' to 'test_randDAG.Rout.save' ...1a2,16 > R version 4.3.1 (2023-06-16) -- "Beagle Scouts" > Copyright (C) 2023 The R Foundation for Statistical Computing > Platform: x86_64-pc-linux-gnu (64-bit) > > R ist freie Software und kommt OHNE JEGLICHE GARANTIE. > Sie sind eingeladen, es unter bestimmten Bedingungen weiter zu verbreiten. > Tippen Sie 'license()' or 'licence()' für Details dazu. > > R ist ein Gemeinschaftsprojekt mit vielen Beitragenden. > Tippen Sie 'contributors()' für mehr Information und 'citation()', > um zu erfahren, wie R oder R packages in Publikationen zitiert werden können. > > Tippen Sie 'demo()' für einige Demos, 'help()' für on-line Hilfe, oder > 'help.start()' für eine HTML Browserschnittstelle zur Hilfe. > Tippen Sie 'q()', um R zu verlassen. 56c71 < Number of Edges = 21 --- > Number of Edges = 0 61c76 < Number of Edges = 13 --- > Number of Edges = 12 66c81 < Number of Edges = 16 --- > Number of Edges = 13 71c86 < Number of Edges = 19 --- > Number of Edges = 16 90,93c105,108 < $ barabasi : chr "4" < $ geometric: chr [1:3] "3" "4" "7" < $ power : chr [1:4] "2" "7" "8" "9" < $ interEr : chr [1:2] "3" "7" --- > $ barabasi : chr [1:10] "1" "2" "3" "4" ... > $ geometric: chr [1:3] "2" "6" "10" > $ power : chr [1:4] "2" "4" "5" "10" > $ interEr : chr [1:2] "5" "6" 108,111c123,126 < $ barabasi : chr [1:3] "1" "6" "7" < $ geometric: chr [1:3] "5" "6" "9" < $ power : chr [1:3] "4" "5" "10" < $ interEr : chr [1:2] "2" "4" --- > $ barabasi : chr [1:10] "1" "2" "3" "4" ... > $ geometric: chr [1:4] "1" "3" "5" "10" > $ power : chr [1:4] "1" "6" "7" "8" > $ interEr : chr [1:3] "1" "3" "8" 145c160 < Number of Edges = 13 --- > Number of Edges = 0 150c165 < Number of Edges = 6 --- > Number of Edges = 12 155c170 < Number of Edges = 11 --- > Number of Edges = 13 160c175 < Number of Edges = 10 --- > Number of Edges = 11 174a190 > Lade nötiges Paket: Matrix 240,242c256,258 < 1 . . . . | . . . | . < 2 . . . | | . . | | . < 3 . | . | . . . | | . --- > 1 . . . . . . . . . . > 2 . . . . . . . . . . > 3 . . . . . . . . . . 244,249c260,265 < 5 . . . . . . . | . . < 6 . | | . | . . . . | < 7 . | . | . . . . . . < 8 . . . | . . . . . . < 9 . . . | . . . . . . < 10 . . | . | . . . . . --- > 5 . . . . . . . . . . > 6 . . . . . . . . . . > 7 . . . . . . . . . . > 8 . . . . . . . . . . > 9 . . . . . . . . . . > 10 . . . . . . . . . . 255,264c271,280 < 1 . . | . . . . . . . < 2 . . . . . . | . . . < 3 . . . . . . . . . . < 4 . . . . . . . . . . < 5 . | . . . . | . . | < 6 . . . . . . . . . | < 7 . . . . . . . . . . < 8 | . | | . . . . . . < 9 | . | . . . . | . . < 10 . . . . . . | . . . --- > 1 . . . . . | . | . . > 2 . . . . . . . . . . > 3 . | . | . . . . . . > 4 . | . . . . . . . . > 5 . . . . . . . . | . > 6 . . . . . . . . . . > 7 . | . . . | . . . . > 8 . . . . . | | . . . > 9 . . . | . . | . . . > 10 . . . . . . . . . . 270c286 < 1 . . . . . . | . . . --- > 1 . . | . | . . . | . 272,279c288,295 < 3 | | . . . . | | | . < 4 | . | . . | | . . . < 5 . . | . . . . . . . < 6 . . . . . . | . . . < 7 . . . . . . . . . . < 8 . . . . . . . . . . < 9 . . . . . . . . . . < 10 | . | . . . | . | . --- > 3 . . . | . . . . . . > 4 . . . . . . . . . . > 5 . . . . . . . . . . > 6 . | . . . . . . | . > 7 . . . | . . . . | | > 8 . . . | . . . . | . > 9 . . | . . . . . . | > 10 . . . . . . . . . . 285,294c301,310 < 1 . . . . . . . . . | < 2 | . | . . . . . | | < 3 . . . . . . . . . . < 4 . . . . | | | | . . < 5 . . . . . . | . . . < 6 . . . . | . | | . . < 7 . . . . . . . . . . < 8 | . . . | . . . . . < 9 | . | . . . . . . | < 10 . . | . . . . . . . --- > 1 . . . . | . . . . | > 2 . . . . . | . . | . > 3 . | . . . | | . | . > 4 . . . . | . . . . . > 5 . . . . . . . . . . > 6 . . . . . . . . . . > 7 . . . . . | . . . . > 8 . . . | | | . . . | > 9 . . . . . | . . . . > 10 . . . . | . . . . . 369,372c385,388 < 1 . . . . . | . . . . . . < 2 | . . . . . . . . . | . < 3 | . . . . . . . . . . | < 4 | . . . . . . . . . . . --- > 1 . . . . . . . . . . . . > 2 . . . . . . . . . . . . > 3 . . . . . . . . . . . . > 4 . . . . . . . . . . . . 375,379c391,395 < 7 | . . . . . . . . . . . < 8 | . . . . . . . . . . . < 9 . . . . | | . . . . . . < 10 . . . | . . . . | . . . < 11 . . | . . . . . . . . . --- > 7 . . . . . . . . . . . . > 8 . . . . . . . . . . . . > 9 . . . . . . . . . . . . > 10 . . . . . . . . . . . . > 11 . . . . . . . . . . . . 386,387c402,403 < 1 . . . . . . . . | . . . < 2 . . . | . . . . . | . . --- > 1 . . . . . . . . . . . . > 2 . . . . . . . . . . . . 389c405 < 4 . . . . . . . . . | . . --- > 4 . . | . . . . . . | . . 391c407 < 6 . . . . . . . . . . . | --- > 6 . | . . . . . | . | . . 393,394c409,410 < 8 . . . . . . . . . . . . < 9 . . . . . . . . . . . . --- > 8 . | . . | . . . . | . . > 9 . . | | . . . . . . . . 396,397c412,413 < 11 . . | . . . . . . . . . < 12 . . . . . . . . . . . . --- > 11 . . . . . . . . . . . . > 12 . . | . . . . . | . . . 403,407c419,423 < 1 . . . . . | | . . . . | < 2 . . . . . . | . . . . . < 3 | . . . . . . . . . . . < 4 . . . . . . | . . . . . < 5 | . . . . . . . . . . . --- > 1 . . . . . . . . . . . . > 2 . . . . . . . . . . . . > 3 . . . . . . . . . . . . > 4 . . . . . . . . . . . . > 5 . . . . . . . . . . . . 410,414c426,430 < 8 . . . . . . | . | . . . < 9 . . . . . . . . . . . . < 10 . . . . . . | . . . . . < 11 . . . . . . | . . . . . < 12 . . . . . . . . . . . . --- > 8 | | . | | . . . . . . | > 9 . . | . . . . . . . . . > 10 . | . . . . . | . . . . > 11 . . . . . . . . | . . . > 12 . | . . . | | . | . . . 420,422c436,438 < 1 . . . . . . . . . . . . < 2 . . . . | . . . . . . . < 3 . . . . . . | . . . | . --- > 1 . . . . . . . . . . . | > 2 | . . . . . . | . . . . > 3 . . . . . . . . . . . | 425,431c441,447 < 6 . . . . . . . . . . . . < 7 . . . . | . . . . . . . < 8 . . . . . . . . . . . . < 9 | . . . . . . . . . . . < 10 . . . . . . | | . . . . < 11 . . . . | . . . . . . . < 12 | . . . . | . . . . . . --- > 6 | . . . . . . . . . . | > 7 . . . . . . . . . . . . > 8 | . . . . . . . . . . | > 9 . . . | | . . . . . . . > 10 | . . . . . . . . . . . > 11 . . . . . . . . . . . . > 12 . . . . . . . . . . . . 523,525c539,541 < 1 . . . . | . . . | . < 2 . . . | | . . | | . < 3 . | . | . . . | | . --- > 1 . . . . . . . . . . > 2 . . . . . . . . . . > 3 . . . . . . . . . . 527,532c543,548 < 5 . . . . . . . | . . < 6 . | | . | . . . . | < 7 . | . | . . . . . . < 8 . . . | . . . . . . < 9 . . . | . . . . . . < 10 . . | . | . . . . . --- > 5 . . . . . . . . . . > 6 . . . . . . . . . . > 7 . . . . . . . . . . > 8 . . . . . . . . . . > 9 . . . . . . . . . . > 10 . . . . . . . . . . 538,547c554,563 < 1 . . | . . . . . . . < 2 . . . . . . | . . . < 3 . . . . . . . . . . < 4 . . . . . . . . . . < 5 . | . . . . | . . | < 6 . . . . . . . . . | < 7 . . . . . . . . . . < 8 | . | | . . . . . . < 9 | . | . . . . | . . < 10 . . . . . . | . . . --- > 1 . . . . . | . | . . > 2 . . . . . . . . . . > 3 . | . | . . . . . . > 4 . | . . . . . . . . > 5 . . . . . . . . | . > 6 . . . . . . . . . . > 7 . | . . . | . . . . > 8 . . . . . | | . . . > 9 . . . | . . | . . . > 10 . . . . . . . . . . 553c569 < 1 . . . . . . | . . . --- > 1 . . | . | . . . | . 555,562c571,578 < 3 | | . . . . | | | . < 4 | . | . . | | . . . < 5 . . | . . . . . . . < 6 . . . . . . | . . . < 7 . . . . . . . . . . < 8 . . . . . . . . . . < 9 . . . . . . . . . . < 10 | . | . . . | . | . --- > 3 . . . | . . . . . . > 4 . . . . . . . . . . > 5 . . . . . . . . . . > 6 . | . . . . . . | . > 7 . . . | . . . . | | > 8 . . . | . . . . | . > 9 . . | . . . . . . | > 10 . . . . . . . . . . 568,577c584,593 < 1 . . . . . . . . . | < 2 | . | . . . . . | | < 3 . . . . . . . . . . < 4 . . . . | | | | . . < 5 . . . . . . | . . . < 6 . . . . | . | | . . < 7 . . . . . . . . . . < 8 | . . . | . . . . . < 9 | . | . . . . . . | < 10 . . | . . . . . . . --- > 1 . . . . | . . . . | > 2 . . . . . | . . | . > 3 . | . . . | | . | . > 4 . . . . | . . . . . > 5 . . . . . . . . . . > 6 . . . . . . . . . . > 7 . . . . . | . . . . > 8 . . . | | | . . . | > 9 . . . . . | . . . . > 10 . . . . | . . . . . 652,655c668,671 < 1 . . . . . | . . . . . . < 2 | . . . . . . . . . | . < 3 | . . . . . . . . . . | < 4 | . . . . . . . . . . . --- > 1 . . . . . . . . . . . . > 2 . . . . . . . . . . . . > 3 . . . . . . . . . . . . > 4 . . . . . . . . . . . . 658,662c674,678 < 7 | . . . . . . . . . . . < 8 | . . . . . . . . . . . < 9 . . . . | | . . . . . . < 10 . . . | . . . . | . . . < 11 . . | . . . . . . . . . --- > 7 . . . . . . . . . . . . > 8 . . . . . . . . . . . . > 9 . . . . . . . . . . . . > 10 . . . . . . . . . . . . > 11 . . . . . . . . . . . . 669,670c685,686 < 1 . . . . . . . . | . . . < 2 . . . | . . . . . | . . --- > 1 . . . . . . . . . . . . > 2 . . . . . . . . . . . . 672c688 < 4 . . . . . . . . . | . . --- > 4 . . | . . . . . . | . . 674c690 < 6 . . . . . . . . . . . | --- > 6 . | . . . . . | . | . . 676,677c692,693 < 8 . . . . . . . . . . . . < 9 . . . . . . . . . . . . --- > 8 . | . . | . . . . | . . > 9 . . | | . . . . . . . . 679,680c695,696 < 11 . . | . . . . . . . . . < 12 . . . . . . . . . . . . --- > 11 . . . . . . . . . . . . > 12 . . | . . . . . | . . . 686,690c702,706 < 1 . . . . . | | . . . . | < 2 . . . . . . | . . . . . < 3 | . . . . . . . . . . . < 4 . . . . . . | . . . . . < 5 | . . . . . . . . . . . --- > 1 . . . . . . . . . . . . > 2 . . . . . . . . . . . . > 3 . . . . . . . . . . . . > 4 . . . . . . . . . . . . > 5 . . . . . . . . . . . . 693,697c709,713 < 8 . . . . . . | . | . . . < 9 . . . . . . . . . . . . < 10 . . . . . . | . . . . . < 11 . . . . . . | . . . . . < 12 . . . . . . . . . . . . --- > 8 | | . | | . . . . . . | > 9 . . | . . . . . . . . . > 10 . | . . . . . | . . . . > 11 . . . . . . . . | . . . > 12 . | . . . | | . | . . . 703,705c719,721 < 1 . . . . . . . . . . . . < 2 . . . . | . . . . . . . < 3 . . . . . . | . . . | . --- > 1 . . . . . . . . . . . | > 2 | . . . . . . | . . . . > 3 . . . . . . . . . . . | 708,714c724,730 < 6 . . . . . . . . . . . . < 7 . . . . | . . . . . . . < 8 . . . . . . . . . . . . < 9 | . . . . . . . . . . . < 10 . . . . . . | | . . . . < 11 . . . . | . . . . . . . < 12 | . . . . | . . . . . . --- > 6 | . . . . . . . . . . | > 7 . . . . . . . . . . . . > 8 | . . . . . . . . . . | > 9 . . . | | . . . . . . . > 10 | . . . . . . . . . . . > 11 . . . . . . . . . . . . > 12 . . . . . . . . . . . . Running 'test_randomDAG.R' [2s] Running 'test_rfci.R' [3s] Running 'test_rmvDAG.R' [2s] Running 'test_searchAM.R' [2s] Running 'test_shd.R' [2s] Running 'test_skeleton.R' [4s] Running 'test_udag2pag.R' [1s] Running 'test_udag2pdag.R' [5s] Running 'test_wgtMatrix.R' [2s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [49s] OK * checking PDF version of manual ... [29s] OK * checking HTML version of manual ... [22s] OK * DONE Status: 1 NOTE