* using log directory 'd:/Rcompile/CRANpkg/local/4.4/pharmr.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'pharmr/DESCRIPTION' ... OK
* this is package 'pharmr' version '0.96.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pharmr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking whether startup messages can be suppressed ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [2s] NOTE
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
    44 | {coveff} = 1 + {theta} * ({cov} - {median})
       | ^
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
    44 | {coveff} = 1 + {theta} * ({cov} - {median})
       |                ^
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
    44 | {coveff} = 1 + {theta} * ({cov} - {median})
       |                           ^
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
    44 | {coveff} = 1 + {theta} * ({cov} - {median})
       |                                   ^
checkRd: (-1) add_covariate_effect.Rd:60: Lost braces; missing escapes or markup?
    60 | {coveff} = 1
       | ^
checkRd: (-1) add_covariate_effect.Rd:67: Lost braces; missing escapes or markup?
    67 | {coveff} = 1 + {theta}
       | ^
checkRd: (-1) add_covariate_effect.Rd:67: Lost braces; missing escapes or markup?
    67 | {coveff} = 1 + {theta}
       |                ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
    79 | {coveff} = 1 + {theta1} * ({cov} - {median})
       | ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
    79 | {coveff} = 1 + {theta1} * ({cov} - {median})
       |                ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
    79 | {coveff} = 1 + {theta1} * ({cov} - {median})
       |                            ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
    79 | {coveff} = 1 + {theta1} * ({cov} - {median})
       |                                    ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
    86 | {coveff} = 1 + {theta2} * ({cov} - {median})
       | ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
    86 | {coveff} = 1 + {theta2} * ({cov} - {median})
       |                ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
    86 | {coveff} = 1 + {theta2} * ({cov} - {median})
       |                            ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
    86 | {coveff} = 1 + {theta2} * ({cov} - {median})
       |                                    ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
   101 | {coveff} = exp({theta} * ({cov} - {median}))
       | ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
   101 | {coveff} = exp({theta} * ({cov} - {median}))
       |                ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
   101 | {coveff} = exp({theta} * ({cov} - {median}))
       |                           ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
   101 | {coveff} = exp({theta} * ({cov} - {median}))
       |                                   ^
checkRd: (-1) add_covariate_effect.Rd:114: Lost braces
   114 | min(frac{log(0.01)}{{min} - {median}},
       |         ^
checkRd: (-1) add_covariate_effect.Rd:114: Lost braces
   114 | min(frac{log(0.01)}{{min} - {median}},
       |                    ^
checkRd: (-1) add_covariate_effect.Rd:114: Lost braces; missing escapes or markup?
   114 | min(frac{log(0.01)}{{min} - {median}},
       |                             ^
checkRd: (-1) add_covariate_effect.Rd:115: Lost braces
   115 | frac{log(100)}{{max} - {median}})
       |     ^
checkRd: (-1) add_covariate_effect.Rd:115: Lost braces
   115 | frac{log(100)}{{max} - {median}})
       |               ^
checkRd: (-1) add_covariate_effect.Rd:115: Lost braces; missing escapes or markup?
   115 | frac{log(100)}{{max} - {median}})
       |                        ^
checkRd: (-1) add_covariate_effect.Rd:124: Lost braces
   124 | max(frac{log(0.01)}{{max} - {median}},
       |         ^
checkRd: (-1) add_covariate_effect.Rd:124: Lost braces
   124 | max(frac{log(0.01)}{{max} - {median}},
       |                    ^
checkRd: (-1) add_covariate_effect.Rd:124: Lost braces; missing escapes or markup?
   124 | max(frac{log(0.01)}{{max} - {median}},
       |                             ^
checkRd: (-1) add_covariate_effect.Rd:125: Lost braces
   125 | frac{log(100)}{{min} - {median}})
       |     ^
checkRd: (-1) add_covariate_effect.Rd:125: Lost braces
   125 | frac{log(100)}{{min} - {median}})
       |               ^
checkRd: (-1) add_covariate_effect.Rd:125: Lost braces; missing escapes or markup?
   125 | frac{log(100)}{{min} - {median}})
       |                        ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces; missing escapes or markup?
   133 | {coveff} = (frac{{cov}}{{median}})^{theta}
       | ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces
   133 | {coveff} = (frac{{cov}}{{median}})^{theta}
       |                 ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces
   133 | {coveff} = (frac{{cov}}{{median}})^{theta}
       |                        ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces; missing escapes or markup?
   133 | {coveff} = (frac{{cov}}{{median}})^{theta}
       |                                    ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [32s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [3s] OK
  Running 'testthat.R' [2s]
* checking PDF version of manual ... [34s] OK
* checking HTML version of manual ... [31s] OK
* DONE
Status: 1 NOTE