* using log directory 'd:/Rcompile/CRANpkg/local/4.4/rareNMtests.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86468 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'rareNMtests/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'rareNMtests' version '1.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'rareNMtests' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) BiogTest.individual.Rd:25: Lost braces 25 | \item{powerfun}{ By default rarefied richness is estimated for all subsample sizes, from 1 to \emph{n}, where \emph{n} is the total number of individuals in the sample. If \code{powerfun} is less than 1, it decreases the total number of subsamples as a power function of \{h{n}. } | ^ checkRd: (-1) BiogTest.individual.Rd:66: Lost braces 66 | Chao, A., Gotelli, N.J., Hsieh, T.C., Sander, E.L., Ma, K.H., Colwell, R.K. & Ellison, A.M. (2014). Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. emph{Ecological Monographs} 84: 45-67. | ^ checkRd: (-1) BiogTest.individual.Rd:68: Lost braces 68 | Limpert, E., Stahel, W.A. & Abbt, M. (2001). Log-normal distributions across the sciences: keys and clues. emph{BioScience} 51: 341-352. | ^ checkRd: (-1) BiogTest.individual.Rd:70: Lost braces 70 | O'Hara, R.B. (2005). Species richness estimators: how many species can dance on the head of a pin? emph{Journal of Animal Ecology} 74: 375-386. | ^ checkRd: (-1) EcoTest.individual.Rd:57: Lost braces 57 | Chao, A., Gotelli, N.J., Hsieh, T.C., Sander, E.L., Ma, K.H., Colwell, R.K. & Ellison, A.M. (2014). Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. emph{Ecological Monographs} 84: 45-67. | ^ checkRd: (-1) rarefaction.individual.Rd:37: Lost braces 37 | Chao, A., Gotelli, N.J., Hsieh, T.C., Sander, E.L., Ma, K.H., Colwell, R.K. & Ellison, A.M. (2014). Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. emph{Ecological Monographs} 84: 45-67. | ^ checkRd: (-1) rarefaction.individual.Rd:39: Lost braces 39 | Chao, A. & Jost, J. (2012). Coverage-based rarefaction and extrapolation: standardizing samples by completeness rather than size. emph{Ecology} 93: 2533-2547. | ^ checkRd: (-1) rarefaction.individual.Rd:41: Lost braces 41 | Hill, M.O. (1973). Diversity and evenness: a unifying notation and its consequences. emph{Ecology} 54: 427-432. | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [2s] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [2s] OK * DONE Status: 1 NOTE