* using log directory 'd:/Rcompile/CRANpkg/local/4.4/vegclust.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'vegclust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'vegclust' version '2.0.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'vegclust' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) as.vegclust.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hier.vegclust.Rd:22: Lost braces; missing escapes or markup?
    22 |         For \code{hier.vegclust} and {random.vegclust}, a site (rows) by species (columns) matrix or data frame. For \code{hier.vegclustdist} and {random.vegclustdist}, a square distance matrix.
       |                                      ^
checkRd: (-1) hier.vegclust.Rd:22: Lost braces; missing escapes or markup?
    22 |         For \code{hier.vegclust} and {random.vegclust}, a site (rows) by species (columns) matrix or data frame. For \code{hier.vegclustdist} and {random.vegclustdist}, a square distance matrix.
       |                                                                                                                                                   ^
checkRd: (-1) incr.vegclust.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) incr.vegclust.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) incr.vegclust.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) incr.vegclust.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:47: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [14s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [15s] OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [6s] OK
* DONE
Status: 1 NOTE