Last updated on 2024-05-04 09:49:44 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.4.4 | 119.06 | 236.49 | 355.55 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.4.4 | 89.05 | 185.86 | 274.91 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.4.4 | 562.66 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.4.4 | 497.22 | NOTE | |||
| r-devel-windows-x86_64 | 2.4.4 | 103.00 | 237.00 | 340.00 | NOTE | |
| r-patched-linux-x86_64 | 2.4.4 | 121.27 | 251.21 | 372.48 | NOTE | |
| r-release-linux-x86_64 | 2.4.4 | 87.22 | 246.27 | 333.49 | NOTE | |
| r-release-macos-arm64 | 2.4.4 | 112.00 | NOTE | |||
| r-release-macos-x86_64 | 2.4.4 | 260.00 | NOTE | |||
| r-release-windows-x86_64 | 2.4.4 | 99.00 | 235.00 | 334.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.4.4 | 116.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.4.4 | 238.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.4.4 | 126.00 | 293.00 | 419.00 | NOTE |
Version: 2.4.4
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'DESeq2', 'pmartRdata'
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.4.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [65s/79s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pmartR)
>
> test_check("pmartR")
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 2571 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test_diffexp_seq.R:4:3', 'test_imd_anova.R:5:3',
'test_imd_anova_paired.R:5:3', 'test_plots.R:15:3', 'test_trelliPlots.R:4:3',
'test_trelliPlots_seqData.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_dispersion_est.R:39:3'): dispersion_est returns the correct data frame and attributes ──
Error in `dispersion_est(seqdata_grp, method = "DESeq2")`: package 'DESeq2' required for DESeq2 processing
Backtrace:
▆
1. ├─base::suppressWarnings(dispersion_est(seqdata_grp, method = "DESeq2")) at test_dispersion_est.R:39:3
2. │ └─base::withCallingHandlers(...)
3. └─pmartR::dispersion_est(seqdata_grp, method = "DESeq2")
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 2571 ]
Deleting unused snapshots:
• plots/plot-corres.svg
• plots/plot-cvfilt-log-scale.svg
• plots/plot-cvfilt.svg
• plots/plot-datares-bw-theme.svg
• plots/plot-datares-palette.svg
• plots/plot-datares.svg
• plots/plot-dimres.svg
• plots/plot-imdanovafilt.svg
• plots/plot-isobaricnormres-bw-theme.svg
• plots/plot-isobaricnormres-global-normalized.svg
• plots/plot-isobaricnormres-palette.svg
• plots/plot-isobaricnormres.svg
• plots/plot-isobaricpepdata.svg
• plots/plot-lipiddata.svg
• plots/plot-metabdata.svg
• plots/plot-moleculefilt-cumulative.svg
• plots/plot-moleculefilt.svg
• plots/plot-nares-bar-group-color.svg
• plots/plot-nares-bar-group-order.svg
• plots/plot-nares-scatter.svg
• plots/plot-nmrdata.svg
• plots/plot-nmrnormres-2.svg
• plots/plot-nmrnormres-color-by.svg
• plots/plot-nmrnormres.svg
• plots/plot-normres.svg
• plots/plot-pepdata.svg
• plots/plot-prodata.svg
• plots/plot-proteomicsfilt-redundancy.svg
• plots/plot-proteomicsfilt.svg
• plots/plot-rmdfilt.svg
• plots/plot-rnafilt.svg
• plots/plot-seqdata.svg
• plots/plot-spansres-bw-theme.svg
• plots/plot-spansres-color-high-color-low.svg
• plots/plot-spansres.svg
• plots/plot-statres-anova-volcano.svg
• plots/plot-statres-anova.svg
• plots/plot-statres-combined-volcano.svg
• plots/plot-statres-combined.svg
• plots/plot-statres-gtest.svg
• plots/plot-totalcountfilt.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.4.4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘pmartRdata’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.4.4
Check: installed package size
Result: NOTE
installed size is 7.5Mb
sub-directories of 1Mb or more:
libs 5.0Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64