Package: rhierbaps
Type: Package
Title: Clustering Genetic Sequence Data Using the HierBAPS Algorithm
Version: 1.1.4
Authors@R: person("Gerry", "Tonkin-Hill", email = "g.tonkinhill@gmail.com", role = c("cre", "aut"))
Description: Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) 
  algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences 
  from multiple sequence alignments in FASTA format. 
  The implementation includes improved defaults and plotting capabilities 
  and unlike the original 'MATLAB' version removes singleton SNPs by default.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: ape, purrr, utils, ggplot2, matrixStats, patchwork, methods
RoxygenNote: 7.2.1
Suggests: knitr, rmarkdown, ggtree, phytools, testthat, formatR
VignetteBuilder: knitr
URL: https://github.com/gtonkinhill/rhierbaps
BugReports: https://github.com/gtonkinhill/rhierbaps/issues
NeedsCompilation: no
Packaged: 2022-11-18 14:26:42 UTC; gt4
Author: Gerry Tonkin-Hill [cre, aut]
Maintainer: Gerry Tonkin-Hill <g.tonkinhill@gmail.com>
Repository: CRAN
Date/Publication: 2022-11-18 14:50:07 UTC
Built: R 4.6.0; ; 2026-04-23 02:38:22 UTC; windows
