# Biomonitoring and Bioassessment Calculations

## Documentation for package ‘BioMonTools’ version 1.2.4

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

assign_IndexClass | Assign Index_Class
data_benthos_MBSS | Benthic macroinvertebrate taxa data; MBSS
data_benthos_PacNW | Benthic macroinvertebrate taxa data; Pacific Northwest
data_bio2rarify | rarify example data
data_coral_bcg_metric_dev | Coral taxa data; Florida BCG.
data_coral_bcg_metric_qc | Coral metric value data; Florida BCG.
data_diatom_mmi_dev | Diatom taxa data; Indiana DEM
data_diatom_mmi_qc | Diatom metric value data; Indiana DEM
data_fish_MBSS | Fish data, MBSS
data_metval_scmb_ibi | data_metval_scmb_ibi
data_mmi_dev | Metric data for metric stats for mmi development
data_mmi_dev_small | Metric data for metric stats for mmi development
data_Taxa_MA | Estuary taxa data
MapTaxaObs | Taxa Observation Maps
markExcluded | Mark "exclude" (non-distinct / non-unique / ambiguous) taxa
metric.scores | Score metrics
metric.stats | Calculate metric statistics
metric.stats2 | Secondary metric statistics
metric.values | Calculate metric values
metvalgrpxl | Metric values Groups to Excel
qc.checks | QC checks on metric values
qc_taxa | Quality Control Check on User Data Against Master Taxa List
rarify | Rarify (subsample) biological sample to fixed count
TaxaMaster_Ben_BCG_PacNW | TaxaMaster_Ben_BCG_PacNW
taxa_translate | Taxa Translate