Package Download_score fabia 178 triplex 57 SNAGEE 57 CSAR 79 omicade4 153 deepSNV 162 flowMeans 158 affy 8483 BiocParallel 41601 genefilter 12817 gmapR 170 IRanges 51220 VariantTools 169 BHC 83 illuminaio 2943 BSgenome 13700 Biobase 47758 biocViews 4246 GEOmetadb 236 flowCore 2881 ReactomePA 2401 ASSET 109 MVCClass 93 MEDME 56 mmnet 9 cisPath 58 sigPathway 26 OmicCircos 187 metaMS 108 CoCiteStats 57 Roleswitch 14 RNAither 17 geneRecommender 57 seqCNA 48 ProCoNA 13 jmosaics 7 flowCL 19 GenomeGraphs 19 BiocCaseStudies 16 snpStats 2277 frmaTools 75 TitanCNA 81 BicARE 135 sva 7116 genomeIntervals 179 topGO 3030 PAPi 18 ChAMP 564 nucleR 81 RankProd 289 ensemblVEP 162 rsbml 156 MotifDb 677 ontoCAT 12 MSstats 504 BufferedMatrixMethods 62 hyperdraw 115 asmn 4 flagme 60 CAGEr 134 SJava 5 CMA 116 gene2pathway 4 BeadDataPackR 663 weaver 62 ArrayTV 15 Rolexa 8 AgiMicroRna 137 ADaCGH2 74 AffyCompatible 24 BufferedMatrix 96 cycle 62 IsoGeneGUI 16 anota 87 DECIPHER 2848 cosmo 3 ENVISIONQuery 13 MiChip 55 AffyExpress 14 prebs 71 clstutils 63 TFBSTools 3336 hexbin 20 TDARACNE 17 ccrepe 91 KCsmart 66 Ringo 322 ampliQueso 12 iSeq 53 lpNet 66 mitoODE 12 GRENITS 59 cnvGSA 66 GeneSelectMMD 106 QuasR 357 limmaGUI 75 GSReg 63 netbiov 30 metabomxtr 57 miRNAtap 147 compEpiTools 72 methylPipe 120 RUVnormalize 68 rRDP 65 CoRegNet 41 kebabs 148 Rqc 267 geecc 8 GenomicInteractions 360 GenoView 2 MBASED 56 SNPRelate 1641 tracktables 138 genomation 660 Seqnames 0 pgUtils 3 pairseqsim 2 GeneRfold 2 GeneticsBase 2 affydata 2 arrayQCplot 2 gff3Plotter 2 TRONCO 73 mdqc 103 MSnbase 3217 BrainStars 15 GlobalAncova 999 clusterProfiler 17760 CGEN 65 Rbowtie 513 hiAnnotator 109 les 95 iClusterPlus 355 flowType 16 BiGGR 68 timecourse 74 goseq 1200 GSCA 61 EDASeq 1791 Rgraphviz 9839 AnnotationForge 2426 DEXSeq 1527 GenomicFeatures 20231 Gviz 3899 preprocessCore 14099 PANR 59 DOSE 17354 AnnotationDbi 36748 cn.mops 263 MLInterfaces 399 flowUtils 40 MMDiff 9 TargetSearch 71 synapter 110 MIMOSA 29 BioMVCClass 61 made4 252 BCRANK 73 piano 472 PSICQUIC 23 fastseg 758 RIPSeeker 26 GOFunction 15 chimera 19 ssviz 56 coRNAi 11 GeneOverlap 450 daMA 58 CNORfuzzy 69 DFP 57 affycomp 97 unifiedWMWqPCR 50 UniProt.ws 426 metaSeq 71 RTCA 61 epigenomix 64 ChemmineR 841 CNAnorm 67 Sushi 58 affypdnn 15 wateRmelon 746 clonotypeR 19 GLAD 226 annaffy 274 Resourcerer 5 Clomial 56 ChIPpeakAnno 1011 EBImage 2700 cleanUpdTSeq 107 ReQON 44 networkBMA 16 spikeLI 50 GSVA 6162 ChemmineOB 322 DMRforPairs 25 flowTrans 86 ITALICS 61 deltaGseg 57 motifStack 742 GSAR 88 affyQCReport 20 BioNet 279 HilbertVisGUI 39 ReportingTools 713 ssize 92 SwimR 11 proteinProfiles 55 LVSmiRNA 15 exomePeak 20 exonmap 3 rBiopaxParser 171 roar 61 MLSeq 156 GeneticsPed 103 ddgraph 11 girafe 92 tilingArray 145 TurboNorm 64 CNEr 3340 procoil 63 ecolitk 60 MLP 139 ExiMiR 60 tRanslatome 134 mBPCR 61 genomes 69 lol 11 ChromHeatMap 126 COHCAP 56 antiProfiles 64 CNORdt 67 CoGAPS 271 keggorthology 157 ontoTools 3 PWMEnrich 180 NormqPCR 168 edd 3 Mfuzz 1200 spade 11 Agi4x44PreProcess 5 interactiveDisplayBase 9720 Rnits 55 GOexpress 88 regionReport 129 EnrichmentBrowser 568 CFAssay 52 mygene 338 proBAMr 55 polyester 122 ASGSCA 60 OncoSimulR 61 PAA 69 pepStat 53 FEM 21 SGSeq 317 snpMatrix 9 xmapcore 3 gQTLstats 10 mdgsa 10 logicFS 88 msmsTests 274 PROcess 92 hypergraph 164 easyRNASeq 183 NTW 54 gcrma 1374 Rsamtools 23468 bumphunter 2751 limma 31492 minfi 2371 annotate 17946 seqLogo 3685 Category 1921 genoset 22 ExpressionView 16 DESeq 188 widgetTools 1296 CNTools 134 pdInfoBuilder 118 isobar 85 Rdisop 454 IPPD 14 VariantFiltering 89 macat 44 SIM 54 altcdfenvs 118 RbcBook1 101 RefNet 13 CGHbase 432 HELP 58 Icens 467 BitSeq 22 ARRmNormalization 59 sagenhaft 56 affycoretools 403 RDAVIDWebService 33 BayesPeak 17 vbmp 77 Rcpi 121 TSSi 14 Vega 13 plgem 112 COMPASS 80 eiR 68 pkgDepTools 21 OLIN 94 STRINGdb 1178 SplicingGraphs 91 CoverageView 68 bioDist 259 mgsa 112 rama 16 spotSegmentation 12 PCpheno 15 RDRToolbox 126 AnnotationFuncs 18 arrayQuality 122 flowPhyto 5 ctc 283 CNVtools 13 HTSFilter 217 codelink 77 BioSeqClass 17 SimBindProfiles 52 biocGraph 174 messina 58 paircompviz 63 BiSeq 147 snm 167 spkTools 55 flowMap 45 BaseSpaceR 66 HTSanalyzeR 17 PING 70 cghMCR 68 customProDB 84 iterativeBMA 61 dks 53 qcmetrics 98 oposSOM 79 rqubic 84 a4Base 138 GOSim 112 triform 15 Repitools 305 birta 17 aCGH 213 cobindR 13 spliceSites 15 OLINgui 58 ReadqPCR 196 rfPred 58 RWebServices 4 SeqVarTools 454 cosmoGUI 3 Pviz 78 riboSeq 0 biocDatasets 2 quantro 347 FourCSeq 11 MSGFplus 13 derfinderHelper 569 GenomicTuples 52 derfinder 571 csaw 604 groHMM 73 exonfindR 0 MSnID 259 paxtoolsr 84 GeneGroupAnalysis 3 Ruuid 5 RMAGEML 3 nethet 55 iPAC 132 maanova 20 DeconRNASeq 220 GWASTools 604 OCplus 80 gaia 26 NetSAM 79 ChIPsim 86 viper 698 BEAT 63 SamSPECTRAL 150 INPower 57 DESeq2 21666 ggbio 2144 mzR 3353 pcaMethods 5177 mzID 3076 BiocCheck 1650 zlibbioc 51638 DynDoc 1295 ShortRead 6316 copa 59 DriverNet 59 genefu 418 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52 ChIPXpress 103 clst 95 geNetClassifier 148 IdMappingRetrieval 14 prada 21 spliceR 15 shinyMethyl 110 fbat 3 Rdbi 4 rflowcyt 3 pamr 6 missMethyl 978 switchBox 122 PSEA 43 facopy 6 ALDEx2 1183 COSNet 52 IMPCdata 49 STATegRa 63 flowCHIC 62 simulatorAPMS 3 pxr 0 PROPER 87 FlowSOM 1084 bridge 17 CopyNumber450k 8 PhenStat 62 bsseq 1434 MCRestimate 14 msmsEDA 291 dexus 18 SCAN.UPC 164 flowClust 820 htSeqTools 16 sangerseqR 899 apComplex 67 RPA 106 SRAdb 389 GOstats 1738 GenomicFiles 1310 biomaRt 23700 multtest 12409 siggenes 3297 vsn 5204 pRoloc 263 geneplotter 6804 chipseq 630 clipper 101 SPIA 655 RBGL 9454 hpar 275 AGDEX 67 NetPathMiner 62 GeneExpressionSignature 70 FGNet 114 stepNorm 57 Rtreemix 61 ABSSeq 118 GraphAT 59 DSS 906 factDesign 56 Streamer 62 HMMcopy 261 RUVSeq 934 dagLogo 84 coGPS 59 KEGGprofile 22 attract 77 marray 1910 plethy 22 RSVSim 67 GeneticsDesign 14 cellHTS2 217 QDNAseq 376 qvalue 17129 alsace 16 flowPlots 59 Starr 14 DBChIP 17 MethylSeekR 142 Harshlight 73 intansv 82 FunciSNP 14 diffGeneAnalysis 57 EasyqpcR 16 RBioinf 65 betr 10 CGHregions 83 affyContam 102 affxparser 1609 annmap 116 OrganismDbi 3218 occugene 51 inveRsion 16 sizepower 63 genArise 58 phenoDist 12 SQUADD 45 cummeRbund 226 frma 158 ArrayTools 18 MANOR 58 aroma.light 1978 safe 632 MergeMaid 16 metaArray 15 GOSemSim 16995 copynumber 136 SLqPCR 63 gprege 14 iterativeBMAsurv 55 OTUbase 64 hapFabia 58 xmapbridge 57 RCASPAR 53 PICS 114 farms 45 qusage 396 sRAP 14 savR 26 yaqcaffy 15 pathRender 62 a4Core 165 ChIPQC 353 BUS 61 neaGUI 8 nem 18 ppiStats 16 pint 11 MmPalateMiRNA 15 BAGS 62 chipenrich 159 affyPara 17 TransView 57 RRHO 94 SigFuge 60 waveTiling 16 maDB 4 iFlow 3 makePlatformDesign 3 mQTL.NMR 6 ClassifyR 306 M3D 8 MGFM 62 NGScopy 7 derfinderPlot 146 SigCheck 59 mvGST 4 seqTools 121 flowcatchR 60 specL 61 SemSim 2 arrayMagic 2 Rintact 2 iSPlot 2 rgsepd 51 gQTLBase 12 ChromoViz 2 cpvSNP 59 CGHcall 396 flowFit 15 GeneAnswers 23 sscore 30 AtlasRDF 9 GEOquery 9180 agilp 91 GenomicAlignments 24042 GenomicRanges 42791 VariantAnnotation 9471 GenomeInfoDb 57751 CellNOptR 194 GSEABase 8680 goTools 66 MeasurementError.cor 52 rTRM 157 S4Vectors 55008 xcms 1775 GOTHiC 88 staRank 65 goProfiles 125 annotationTools 129 LBE 235 VegaMC 55 HilbertVis 183 TCC 200 maskBAD 63 matchBox 55 flipflop 14 PAnnBuilder 13 RamiGO 11 NOISeq 568 ddCt 92 BAC 17 nudge 11 qpcrNorm 65 metagenomeSeq 1676 EBcoexpress 78 geneRxCluster 58 SNPchip 20 ncdfFlow 1141 affyILM 69 Risa 72 CAMERA 499 NarrowPeaks 15 PROMISE 104 iBBiG 125 clusterStab 79 methylumi 1459 flowMerge 140 ternarynet 58 fastLiquidAssociation 56 exomeCopy 290 KEGGREST 36034 categoryCompare 72 gaga 105 affyio 8322 KEGGgraph 5507 rTRMui 65 tspair 16 ConsensusClusterPlus 2989 RNAinteract 80 a4Preproc 181 UNDO 68 a4Reporting 118 predictionet 14 GEWIST 51 ELBOW 15 DiffBind 1073 rhdf5 19735 Heatplus 412 RCytoscape 12 qpgraph 184 arrayQualityMetrics 498 sigaR 15 maSigPro 251 DEGraph 68 RmiR 14 ABarray 76 RMAPPER 4 DupChecker 6 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AffyTiling 9 SMAP 44 cancerclass 79 RpsiXML 20 CompGO 13 inSilicoMerging 14 sapFinder 14 supraHex 432 npGSEA 61 AnnotationHub 11451 parody 102 lumi 1139 OrderedList 81 HCsnip 11 rnaSeqMap 17 Clonality 29 PREDA 84 ibh 55 vtpnet 74 DASiR 8 MoPS 7 phenoTest 137 MotIV 28 oligoClasses 1700 netresponse 72 flowStats 518 RGSEA 68 RTN 174 GGtools 20 PathNet 70 DAVIDQuery 7 motifRG 15 MineICA 78 msQC 0 QUALIFIER 16 RedeR 333 flowClean 201 simpleaffy 100 flowDensity 263 GeneSelector 14 charm 16 EBSeq 407 clippda 65 panp 59 Genominator 16 CALIB 15 PGSEA 50 SpacePAC 98 biosvd 13 XDE 65 HiTC 135 HTSeqGenie 56 randPack 57 FRGEpistasis 58 GENE.E 12 trigger 64 makecdfenv 175 MantelCorr 51 logitT 32 CNORode 93 DrugVsDisease 137 plateCore 14 compcodeR 85 KEGGSOAP 6 nondetects 63 ROntoTools 215 rols 442 RLMM 55 LiquidAssociation 85 MiRaGE 69 ASEB 59 CGHnormaliter 70 cn.farms 66 explorase 14 Rmagpie 58 mcaGUI 14 RefPlus 39 DOQTL 10 GeneSpring 3 ballgown 639 erccdashboard 67 systemPipeR 1198 IdeoViz 67 MSGFgui 10 EBSeqHMM 47 focalCall 6 seqplots 12 GOsummaries 51 RGalaxy 17 gpls 183 hopach 323 DMRcate 869 Mirsynergy 12 adSplit 72 reb 13 shinyTANDEM 13 SSPA 67 microRNA 158 BiocStyle 6469 cellGrowth 13 impute 10440 Biostrings 46244 BiocInstaller 423 XVector 48124 blima 57 TargetScore 68 dyebias 62 rTANDEM 18 MBCB 56 plier 116 lapmix 54 rGADEM 303 oligo 1656 dualKS 16 gaucho 12 ScISI 21 oneChannelGUI 13 gage 810 ChIPseeker 1837 tweeDEseq 138 affylmGUI 86 flowPeaks 182 OSAT 68 Cormotif 60 GSRI 63 mosaics 143 AllelicImbalance 102 pathview 4367 DEGseq 163 fmcsR 268 interactiveDisplay 105 genoCN 57 LPEadj 41 maPredictDSC 62 openCyto 667 chroGPS 14 GeneGA 48 TEQC 69 flowWorkspace 1296 MeSHDbi 263 chopsticks 94 Basic4Cseq 66 epivizr 122 ffpe 72 meshr 143 EDDA 16 CexoR 64 methyAnalysis 20 bigmemoryExtras 15 survcomp 1077 arrayMvout 63 cellHTS 11 prot2D 12 virtualArray 6 convert 149 EBarrays 223 cqn 290 stepwiseCM 10 iontree 12 SomatiCA 10 a4Classif 117 CancerMutationAnalysis 15 DTA 86 LMGene 14 manta 14 SpeCond 72 methVisual 14 inSilicoDb 13 GraphPAC 104 DNaseR 5 SomaticSignatures 179 flowQ 10 rHVDM 13 Mulcom 74 maigesPack 43 biomvRCNS 60 gwascat 616 nnNorm 60 pdmclass 12 rMAT 12 rSFFreader 10 SANTA 55 splots 208 sSeq 174 wavClusteR 64 MethylAid 92 cosmiq 69 GeneTraffic 3 PatientGeneSets 2 externalVector 3 MultiMed 56 STAN 15 AIMS 426 GeneR 4 TSCAN 622 riboSeqR 51 simulatorZ 9 metagene 30 pepXMLTab 62 Metab 33 RdbiPgSQL 2 Rredland 2 keggorth 2 stam 2 GeneTS 2 gespeR 87 GENESIS 348 BrowserVizDemo 3 diffHic 104 EMDomics 73 ENCODExplorer 8 podkat 54 RCyjs 76 BEclear 71 INSPEcT 69 EnrichedHeatmap 582 traseR 53 goCluster 1 SICtools 48 lfa 289 dupRadar 108 caOmicsV 8 DAPAR 133 TimerQuant 0 dcGSA 53 R4RNA 626 CODEX 103 birte 7 FISHalyseR 52 CAnD 10 SIMAT 56 FlowRepositoryR 10 seqPattern 689 SVM2CRM 7 TIN 52 TPP 98 mAPKL 11 RareVariantVis 63 OperaMate 4 erma 96 ChIPComp 64 rCGH 112 RCy3 953 exprExternal 1 hierGWAS 57 Imetagene 8 Path2PPI 60 Prostar 80 AnnotationHubData 372 GEOsearch 4 systemPipeRdata 0 globalSeq 55 gdsfmt 2092 coMET 83 BrowserViz 173 LowMACA 16 edge 101 gtrellis 132 parglms 52 R3CPET 56 InPAS 62 LEA 517 CausalR 68 mtbls2 0 Oscope 90 RTCGA 548 ldblock 82 mmgmos 1 eudysbiome 48 FindMyFriends 11 miRcomp 54 gcatest 57 sidap 0 Cardinal 173 ComplexHeatmap 14270 DMRcaller 83 rGREAT 674 OmicsMarkeR 8 regioneR 2056 msa 1522 SELEX 56 sigsquared 53 MeSHSim 3 MethTargetedNGS 52 TCGAbiolinks 3628 Guitar 132 widgetInvoke 2 DChIPRep 9 ProteomicsAnnotationHubData 10 LOLA 305 HilbertCurve 88 GeneBreak 65 SNPhood 61 multiClust 89 immunoClust 67 pwOmics 121 cogena 87 Rhtslib 24600 pandaR 127 rcellminer 66 seq2pathway 126 similaRpeak 61 sincell 61 mogsa 177 RTCGAToolbox 574 rnaseqcomp 60 variancePartition 952 mirIntegrator 69 motifbreakR 215 TarSeqQC 13 CNPBayes 7 SISPA 27 bim 2 GenomeBase 1 rfcdmin 2 LedPred 48 ABAEnrichment 11 GUIDEseq 79 scde 342 FamAgg 76 ggtree 20568 canceR 87 chromDraw 57 CopywriteR 25 GoogleGenomics 6 pmm 46 SummarizedExperiment 38239 soGGi 353 muscle 328 NanoStringQCPro 39 acde 66 HIBAG 127 genotypeeval 15 IONiseR 72 destiny 686 XBSeq 9 biobroom 196 iSNetwork 2 reposTools 1 SNAData 2 applera 1 MEAL 79 DNABarcodes 165 SWATH2stats 60 sbgr 2 lpsymphony 1094 kimod 6 normalize450K 50 flowVS 101 ProtGenerics 11686 RnBeads 289 ENmix 218 ensembldb 9997 RBM 60 skewr 45 RnaSeqSampleSize 93 bamsignals 1114 netbenchmark 8 DeMAND 52 ropls 1224 PGA 11 miRLAB 66 NanoStringDiff 94 myvariant 86 iCheck 55 iGC 52 OGSA 7 pathVar 23 SEPA 6 biomformat 5545 iCOBRA 178 BioQC 117 profileScoreDist 50 BubbleTree 72 conumee 153 cytofkit 23 diggit 54 GreyListChIP 998 RUVcorr 59 RNAprobR 7 IVAS 81 MatrixRider 61 ELMER 179 CNVPanelizer 62 metaX 3 RiboProfiling 82 subSeq 70 y2hStat 1 DiffLogo 65 metagenomeFeatures 9 fCI 54 BBCAnalyzer 59 Prize 8 synlet 50 consensusSeekeR 105 transcriptR 71 CrispRVariants 133 scran 4770 RCAS 132 HDF5Array 12994 DRIMSeq 299 miRNAmeConverter 60 dada2 2262 PanVizGenerator 9 AneuFinder 87 Director 47 covRNA 57 ImmuneSpaceR 59 epivizrServer 147 maftools 2548 Linnorm 225 Mergeomics 65 SwathXtend 69 contiBAIT 49 MADSEQ 55 netprioR 50 splineTCDiffExpr 1 SNPediaR 53 SPLINTER 59 MoonlightR 73 psichomics 73 yamss 62 flowPloidy 65 fCCAC 56 CancerInSilico 17 samExploreR 8 DEFormats 255 fgsea 16772 IHW 716 doppelgangR 138 pbcmc 5 qsea 66 LymphoSeq 65 debrowser 178 ExpressionAtlas 176 geneplast 94 iCARE 122 ggcyto 902 FunChIP 53 GSALightning 54 MultiDataSet 1258 SMITE 57 MODA 57 ASAFE 50 ImpulseDE 6 eegc 79 LINC 8 SIMLR 248 KEGGlincs 71 MAST 2056 StarBioTrek 51 GOpro 131 CancerSubtypes 101 chimeraviz 105 tximport 3359 Glimma 1205 EGAD 65 EGSEA 150 scater 6896 clustComp 64 isomiRs 139 CINdex 73 MMDiff2 51 EWCE 154 ExperimentHubData 298 tofsims 9 MethPed 54 cellity 63 epivizrStandalone 62 normr 135 CytoML 456 genphen 9 alpine 41 philr 181 proFIA 13 yarn 136 anamiR 8 BiocWorkflowTools 176 CCPROMISE 64 BUMHMM 69 ramwas 129 ASpli 102 flowAI 555 OncoScore 57 ISoLDE 46 JunctionSeq 12 PCAN 58 diffloop 26 recount 400 ccmap 80 clusterExperiment 353 DeepBlueR 42 GRmetrics 87 EpiCluster 0 M3Drop 615 matter 210 TVTB 62 MetaboSignal 119 synergyfinder 186 YAPSA 84 gCrisprTools 61 bigmelon 65 coseq 124 DelayedArray 42993 sparseDOSSA 34 gcapc 57 rDGIdb 78 EBSEA 51 methylKit 639 pcaExplorer 470 BatchQC 109 psygenet2r 73 epivizrData 131 CountClust 11 GenVisR 279 pqsfinder 91 QUBIC 137 MetCirc 72 AMOUNTAIN 94 covEB 51 sscu 51 chromstaR 89 annotatr 473 geneAttribution 54 clusterSeq 46 BgeeDB 120 EmpiricalBrownsMethod 132 ROTS 211 LOBSTAHS 62 chromPlot 150 ExperimentHub 7598 sevenbridges 66 oppar 62 cellTree 14 nucleoSim 59 garfield 56 CVE 6 MGFR 66 dSimer 7 switchde 57 Uniquorn 58 esetVis 75 statTarget 97 IWTomics 53 geneXtendeR 112 phosphonormalizer 51 BaalChIP 60 uSORT 51 MutationalPatterns 330 CellMapper 65 HelloRanges 134 MWASTools 158 RJMCMCNucleosomes 57 QuaternaryProd 75 bacon 107 BayesKnockdown 58 CHRONOS 58 ClusterSignificance 58 MBttest 52 GMRP 54 SpidermiR 76 metaCCA 186 Chicago 95 RImmPort 48 GeneGeneInteR 56 biosigner 83 recoup 57 NetCRG 0 Pigengene 120 bioCancer 73 ctsGE 60 PureCN 159 IPO 123 MultiAssayExperiment 5347 Harman 169 SVAPLSseq 7 crossmeta 173 treeio 19941 meshes 141 PharmacoGx 278 readat 8 regsplice 53 DEsubs 59 FitHiC 65 GAprediction 53 Anaquin 57 RnaSeqGeneEdgeRQL 2 DNAshapeR 78 SC3 389 genbankr 112 splineTimeR 68 odseq 66 sights 55 InteractionSet 1881 RGraph2js 55 BadRegionFinder 57 GenoGAM 11 CONFESS 62 msPurity 77 GEM 59 GenRank 7 BasicSTARRseq 57 SRGnet 7 PathoStat 82 signeR 75 Pi 68 BPRMeth 93 crisprseekplus 28 scDD 139 GRridge 15 scone 111 cellscape 44 timescape 77 Logolas 8 RTNduals 82 goSTAG 62 TSRchitect 11 beachmat 15389 IntEREst 71 MaxContrastProjection 9 flowTime 66 GenomicDataCommons 1163 ideal 103 basecallQC 68 Organism.dplyr 426 pathprint 7 EpiDISH 600 IntramiRExploreR 51 seqcombo 56 mfa 85 TFARM 50 cbaf 63 esATAC 93 MetaCyto 75 ANF 53 gep2pep 54 omicsPrint 55 LineagePulse 38 DMRScan 50 metavizr 13 rqt 51 swfdr 60 GA4GHclient 110 geneClassifiers 53 banocc 78 branchpointer 74 SingleCellExperiment 14922 heatmaps 275 netReg 8 PPInfer 135 oneSENSE 19 diffuStats 67 coexnet 13 SCnorm 98 CEMiTool 144 miRsponge 6 geoquery 1 amplican 84 seqCAT 57 biobase 1 trena 36 chromswitch 22 transcriptogramer 61 ivygapSE 52 restfulSE 118 PROPS 55 rhvdm 0 affyplm 0 REMP 71 twoddpcr 56 BioCor 82 Rhdf5lib 23726 hicrep 11 splatter 434 STROMA4 30 DASC 2 ChIPexoQual 68 motifcounter 59 TReNA 2 GA4GHshiny 67 methInheritSim 65 motifmatchr 1366 Scale4C 47 RVS 52 BiocSklearn 74 TFHAZ 55 InterMineR 77 AUCell 2244 ChIPanalyser 56 multiMiR 231 methyvim 8 iterClust 44 vulcan 67 oncomix 52 TCseq 164 EventPointer 66 AnnotationFilter 10534 ATACseqQC 369 scmap 255 methylInheritance 67 semisup 50 MIGSA 13 ndexr 72 phenopath 91 miRBaseConverter 110 epivizrChart 58 panelcn.mops 83 openPrimeRui 64 iranges 1 biostrings 0 rhdf5client 149 runibic 80 TnT 40 SeqSQC 102 tenXplore 50 stageR 181 ontoProc 235 sampleClassifier 57 GISPA 44 RIVER 54 RITAN 64 multiOmicsViz 41 GenomicScores 680 karyoploteR 876 IMAS 59 NADfinder 59 CATALYST 504 discordant 84 epiNEM 148 IsoformSwitchAnalyzeR 261 HiCcompare 279 GENIE3 1179 cytolib 2794 DEP 500 zFPKM 113 SPONGE 52 apeglm 3486 openPrimeR 142 chromVAR 1134 scPipe 137 pcxn 50 PathwaySplice 7 topdownr 76 TFEA.ChIP 70 TCGAbiolinksGUI 25 pgca 50 RTNsurvival 63 MCbiclust 56 ImpulseDE2 12 RaggedExperiment 935 OPWeight 53 scoreInvHap 59 rexposome 104 Onassis 10 Rbowtie2 307 TMixClust 69 MSstatsQC 78 BASiCS 169 scfind 6 JASPAR2018 3 DelayedMatrixStats 16295 anota2seq 78 bnbc 131 methimpute 61 annbuilder 0 loci2path 51 MAGeCKFlute 369 biotmle 62 consensusOV 113 BiocFileCache 26290 funtooNorm 62 cydar 88 DaMiRseq 122 mimager 65 Doscheda 62 M3C 704 miRmine 33 shortread 0 MIRA 123 GOfuncR 295 flowclust 1 mapscape 53 POST 8 BioMedR 3 RProtoBufLib 2729 wiggleplotr 171 msgbsR 67 ClusterJudge 55 BLMA 71 cellbaseR 74 zinbwave 893 microbiome 1669 DMCHMM 54 IrisSpatialFeatures 4 bsgenome 0 slalom 118 progeny 416 mpra 60 bcSeq 61 MetaNeighbor 90 signet 7 biocinstaller 2 srnadiff 57 enrichplot 17227 MetaGxOvarian 2 CHARGE 6 igvR 111 InTAD 55 mCSEA 107 decontam 1684 CAGEfightR 169 RSeqAn 82 singscore 1294 ipdDb 119 MSstatsQCgui 46 Rmmquant 50 CellTrails 56 appreci8R 101 miRSM 42 DEqMS 226 LRBaseDbi 116 MPRAnalyze 61 annotationdbi 1 compartmap 34 dnacopy 1 rScudo 53 SummarizedBenchmark 49 hipathia 139 phantasus 159 dmrseq 202 FELLA 129 singleCellTK 259 CAMTHC 4 slingshot 1468 sevenC 52 scruff 68 perturbatr 7 pogos 62 methylGSA 108 sparsenetgls 49 SIMD 53 RNASeqR 8 plpe 0 ProteoMM 79 artMS 81 tRNAdbImport 116 COCOA 71 HiCBricks 150 rbgl 1 tkwidgets 1 genomicfeatures 1 DelayedDataFrame 65 deco 10 seqlogo 0 DropletUtils 2614 iCNV 54 iSEE 465 kissDE 62 SparseSignatures 57 DominoEffect 59 ccfindR 96 TissueEnrich 171 MetID 56 rWikiPathways 393 SEPIRA 25 SIAMCAT 113 omicplotR 61 GeneAccord 8 onlineFDR 48 hierinf 46 tximeta 1150 countsimQC 167 topgo 0 levi 47 PrecisionTrialDrawer 7 Trendy 61 RcisTarget 836 martini 57 mdp 57 GDSArray 148 GSEABenchmarkeR 84 CytoDx 71 RGMQL 51 ChIPSeqSpike 9 kmknn 0 Rgin 8 RNAdecay 40 coRdon 175 PowerExplorer 7 NormalyzerDE 168 HPAanalyze 127 FCBF 41 OMICsPCA 62 LoomExperiment 604 IsoCorrectoR 101 MTseeker 3 snpmatrix 1 roma 1 hmdbQuery 72 BiocVersion 59079 TxRegInfra 7 DEsingle 247 diffcyt 371 tRNAscanImport 75 TCGAutils 849 plyranges 1274 GIGSEA 47 Sconify 57 OUTRIDER 204 powerTCR 380 netSmooth 64 strandCheckR 54 ACE 89 maser 119 Ularcirc 65 genomicranges 0 KinSwingR 55 glmSparseNet 153 MSstatsTMT 281 bayNorm 82 ERSSA 51 universalmotif 561 abseqR 59 transite 56 ADAM 128 decompTumor2Sig 129 IsoCorrectoRGUI 62 scTensor 124 DNABarcodeCompatibility 46 degseq 1 MACPET 10 ChIC 18 missRows 54 GARS 60 GateFinder 61 vidger 100 DEScan2 67 diffcoexp 192 SDAMS 56 seqsetvis 68 qPLEXanalyzer 73 TFutils 77 condcomp 3 INDEED 47 multiHiCcompare 173 SCBN 83 REBET 46 BiocNeighbors 10477 pkgdeptools 0 mixOmics 2754 tRNA 142 PepsNMR 121 omicRexposome 60 GDCRNATools 299 DEComplexDisease 10 CTDquerier 55 TTMap 50 IMMAN 50 iteremoval 8 MDTS 48 drawProteins 190 BEARscc 57 adaptest 6 BiocOncoTK 76 RandomWalkRestartMH 105 OmaDB 205 NBSplice 10 nuCpos 53 brainImageR 2 mlm4omics 3 iasva 52 EnhancedVolcano 4338 MetNet 54 breakpointR 62 FoldGO 28 XINA 46 ExCluster 46 AffiXcan 57 QSutils 70 Wrench 1663 cTRAP 71 BDMMAcorrect 33 edger 1 cntools 1 gostats 1 bayseq 1 gsean 60 GeneStructureTools 79 BUScorrect 52 scmeth 70 scFeatureFilter 52 ddPCRclust 74 BiFET 58 BioNetStat 77 CellScore 52 slinky 6 gwasurvivr 84 FastqCleaner 82 ASICS 87 ORFik 203 consensus 52 celaref 73 icetea 55 sesame 696 sigFeature 215 plotGrouper 50 BiocPkgTools 159 cicero 212 HIREewas 51 primirTSS 59 gpart 16 NeighborNet 24 consensusDE 71 TimeSeriesExperiment 10 AssessORF 71 logitt 1 category 1 rgraphviz 1 VCFArray 60 batchelor 3844 qckitfastq 59 DeMixT 97 miRspongeR 39 scMerge 514 SMAD 50 CellMixS 81 epihet 9 SpatialCPie 74 PoTRA 7 CNVRanger 126 netboost 44 TNBC.CMS 50 scRecover 59 AlphaBeta 57 TOAST 387 deltaCaptureC 50 RNAmodR 115 Autotuner 6 SQLDataFrame 53 gramm4R 4 idr2d 54 scPCA 91 HCAExplorer 3 ASpediaFI 7 CNVfilteR 60 RCM 64 BiocSingular 12144 gpuMagic 52 fishpond 276 metagene2 69 profileplyr 232 GNET2 53 ngsReports 74 Structstrings 157 SubCellBarCode 55 proBatch 29 alevinQC 86 DiscoRhythm 65 Rcwl 106 survtype 55 SingleR 3952 scGPS 69 brendaDb 53 RNAmodR.AlkAnilineSeq 62 scBFA 58 muscat 439 geometadb 0 MOSim 52 CrossICC 3 DMCFB 44 scTGIF 154 biscuiteer 66 MMUPHin 117 mitch 64 arrayexpress 1 VennDetail 234 bigPint 33 CHETAH 99 evaluomeR 53 MOFA 6 phemd 33 qsmooth 146 TPP2D 54 Maaslin2 1015 XCIR 5 SharedObject 156 onechannelgui 0 ssPATHS 45 MACSQuantifyR 46 oppti 47 selectKSigs 49 PAIRADISE 81 RcwlPipelines 97 Modstrings 210 PrInCE 59 adductomicsR 57 ssrch 80 SpectralTAD 79 celda 683 pipeFrame 167 Rhisat2 224 infercnv 1069 CoRegFlux 3 topconfects 169 PAST 48 AWFisher 61 calm 46 GenomicOZone 59 SigsPack 52 KnowSeq 60 debCAM 62 pwrEWAS 27 methylCC 71 microbiomeDASim 58 RNAsense 46 tradeSeq 504 flowSpy 4 cliqueMS 114 MethCP 7 MSstatsSampleSize 19 rsamtools 0 OmicsLonDA 21 pram 49 atSNP 73 mnem 155 animalcules 121 OVESEG 51 cytofast 5 sRACIPE 64 HCABrowser 5 pathwayPCA 77 DepecheR 115 GAPGOM 8 SynMut 49 MetaVolcanoR 54 proDA 240 SCANVIS 62 circRNAprofiler 73 flowSpecs 71 arrayqualitymetrics 0 ReactomeGSA 223 sojourner 11 chippeakanno 0 SAIGEgds 76 fcoex 74 gscreend 47 blacksheepr 60 brainflowprobes 47 geneticsbase 0 BiocSet 239 iterativebmasurv 0 cummerbund 1 graper 51 rmelting 68 CellBench 134 dcanr 126 RepViz 109 enrichTF 67 hypeR 83 AMARETTO 132 sitePath 57 BioMM 19 StructuralVariantAnnotation 216 Melissa 53 cola 132 IgGeneUsage 49 VariantExperiment 49 fcScan 55 HiLDA 71 SBGNview 172 RNAmodR.ML 55 MMAPPR2 18 gemini 53 LinkHD 51 ALPS 5 SEtools 146 GmicR 68 MEB 50 scDblFinder 1427 schex 229 DEWSeq 58 methrix 87 OmnipathR 534 MBQN 56 ceRNAnetsim 49 gseabase 0 CluMSID 67 scAlign 15 HumanTranscriptomeCompendium 51 mbkmeans 445 divergence 46 projectR 111 TreeSummarizedExperiment 1665 BANDITS 108 GladiaTOX 50 lipidr 191 CopyNumberPlots 153 nanotatoR 98 NBAMSeq 100 PhyloProfile 75 BUSpaRse 196 ncGTW 54 RNAmodR.RiboMethSeq 57 waddR 53 Spaniel 79 biomart 0 BioTIP 69 pulsedSilac 6 signatureSearch 223 netboxr 9 widgettools 1 PCAtools 1191 ADAMgui 91 scds 501 Xeva 74 doseR 50 ViSEAGO 131 Qtlizer 53 target 49 APAlyzer 70 lionessR 54 PERFect 38 peakPantheR 60 GCSscore 22 dearseq 174 DIAlignR 57 ROSeq 50 methylSig 75 scTHI 47 AnVIL 573 rfaRm 45 rhdf5filters 19080 eisaR 112 spqn 48 structToolbox 109 PeacoQC 223 tomoda 44 Rfastp 142 uncoverappLib 57 SCATE 75 FScanR 22 ANCOMBC 1238 wpm 57 FilterFFPE 49 escape 369 hummingbird 45 tidySingleCellExperiment 206 sigpathway 0 parallel 1 tcltk 1 mina 47 bnem 60 mumosa 72 BumpyMatrix 558 ttgsea 84 PoDCall 48 SimFFPE 46 BgeeCall 47 metaseqR2 59 dpeak 23 combi 73 sparseMatrixStats 15596 peco 49 CARNIVAL 145 DAMEfinder 59 RNAAgeCalc 70 ctgGEM 5 GGPA 47 cytomapper 314 weitrix 53 TBSignatureProfiler 70 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367 tscR 17 DegNorm 59 spicyR 186 ribor 49 ROCpAI 45 dittoSeq 1441 glmGamPoi 4110 distinct 230 frenchFISH 44 HIPPO 50 ribosomeProfilingQC 81 proActiv 64 MSPrep 121 ncRNAtools 50 MSstatsTMTPTM 4 NanoMethViz 81 biocthis 234 MSstatsConvert 479 famat 60 marr 47 megadepth 121 pageRank 55 DEXICA 0 RLassoCox 52 dichromat 3 sendmailR 2 PFP 14 easyreporting 54 struct 153 scMAGeCK 8 SCOPE 55 TreeAndLeaf 130 optimalFlow 60 scHOT 67 PloGO2 64 sarks 46 scClassify 71 MatrixGenerics 39929 exomePeak2 98 CiteFuse 89 SynExtend 55 TAPseq 57 GCSConnection 5 BRGenomics 142 cmapR 399 rrvgo 468 SeqGate 45 ResidualMatrix 3470 scCB2 55 preciseTAD 60 ggtreeExtra 1037 GCSFilesystem 6 pipeComp 54 flowCut 105 Omixer 55 VplotR 56 MethReg 70 MSstatsPTM 198 BrainSABER 8 musicatk 81 HPAStainR 14 MOGAMUN 53 tidySummarizedExperiment 330 microbiomeExplorer 83 BayesSpace 230 AnVILPublish 53 SCFA 47 degraph 1 VarCon 45 pga 0 hicbricks 0 GO.db 15 Homo.sapiens 6 tools 1 utils 1 string 1 methods 1 GenomicDistributions 92 biobtreeR 52 EnMCB 54 GeneTonic 274 clustifyr 142 reconsi 52 netDx 48 NoRCE 53 snapcount 59 EpiTxDb 87 fmrs 120 HCAMatrixBrowser 2 corral 76 CytoTree 15 Spectra 1620 sangeranalyseR 178 periodicDNA 49 systemPipeShiny 61 ILoReg 45 MesKit 75 customCMPdb 55 ToxicoGx 69 PhosR 113 ReactomeContentService4R 106 moanin 137 geneLenDataBase 10 hgu133plus2.db 8 org.Hs.eg.db 16 splines 1 stats4 1 GenomeInfoDbData 21 rstudio 1 compiler 1 labeling 147 NPARC 57 MEAT 47 OpenStats 49 ExploreModelMatrix 159 cBioPortalData 430 scuttle 9853 timeOmics 72 rSWeeP 48 gmoviz 54 LACE 125 recountmethylation 65 velociraptor 123 snifter 137 Informeasure 41 spatialHeatmap 172 GWENA 192 TileDBArray 59 padma 47 infinityFlow 69 GSEAmining 63 POMA 92 cfDNAPro 59 lefser 569 TimiRGeN 58 rnaEditr 52 cindex 0 affio 0 BSgenome.Hsapiens.UCSC.hg38 12 graphics 1 censcyt 59 GEOfastq 71 nempi 60 CAEN 46 CeTF 82 MicrobiotaProcess 519 MOMA 56 regutools 62 pmp 121 randRotation 45 bluster 5140 basilisk 4555 iSEEu 112 GPA 52 getDEE2 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dir.expiry 4079 vissE 98 MungeSumstats 1032 MQmetrics 40 XNAString 52 decoupleR 1011 ramr 47 cyanoFilter 53 memes 197 HGC 64 GEOexplorer 63 scanMiR 80 BentoBox 0 DelayedTensor 51 FindIT2 57 m6Aboost 44 synapsis 44 biodbUniprot 51 MsBackendRawFileReader 63 mitoClone2 57 biodbKegg 67 BioPlex 4 pengls 43 GeoDiff 75 pairkat 57 hermes 110 GBScleanR 59 netZooR 61 dce 68 Travel 4 OSCA 5 OSCA.advanced 16 SCArray 79 condiments 92 BloodGen3Module 135 wppi 46 KBoost 46 cbpManager 55 MSstatsLOBD 49 treekoR 60 CytoGLMM 98 PhenoGeneRanker 43 FLAMES 77 methylclock 152 spatialDE 105 traviz 59 NxtIRFcore 15 iPath 44 ProteoDisco 53 sparrow 121 scTreeViz 50 MsBackendMgf 424 InteractiveComplexHeatmap 390 MACSr 105 DExMA 62 epigraHMM 57 epidecodeR 48 mirTarRnaSeq 64 conclus 6 CNViz 54 midasHLA 53 methylscaper 66 tricycle 230 cellmigRation 49 supersigs 58 rawrr 208 Dino 57 biodbHmdb 60 enhancerHomologSearch 56 MSstatsLiP 76 nullranges 172 transformGamPoi 77 txcutr 48 segmenter 57 ORFhunteR 54 CONSTANd 51 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