Package	Download_score
Seqnames	0
IRanges	51052
Biobase	47485
affy	8554
QuasR	355
BSgenome	13590
DECIPHER	2800
genefilter	12973
OmicCircos	189
flowCore	2872
AgiMicroRna	135
flowMeans	158
ReactomePA	2362
sva	7145
sigPathway	28
CAGEr	119
snpStats	2254
BeadDataPackR	662
ArrayTV	15
GEOmetadb	236
MotifDb	642
topGO	3028
illuminaio	2914
PAPi	18
genomeIntervals	178
IsoGeneGUI	15
CMA	115
nucleR	80
geneRecommender	55
GenomeGraphs	19
ADaCGH2	71
AffyExpress	14
BicARE	134
BiocCaseStudies	16
AffyCompatible	24
Roleswitch	14
CSAR	79
MEDME	54
SNAGEE	54
ProCoNA	12
triplex	55
ENVISIONQuery	13
Rolexa	8
iSeq	51
TFBSTools	3242
ensemblVEP	163
cycle	60
BufferedMatrix	94
MiChip	54
TDARACNE	16
ASSET	105
cisPath	56
fabia	176
biocViews	4243
jmosaics	7
cosmo	3
rsbml	155
omicade4	136
Ringo	348
limmaGUI	72
RNAither	17
BiocParallel	41814
mitoODE	12
weaver	61
RankProd	292
CoCiteStats	55
clstutils	61
flagme	59
cnvGSA	64
VariantTools	169
ampliQueso	11
GeneSelectMMD	105
pgUtils	3
seqCNA	51
ChAMP	545
anota	85
KCsmart	64
hyperdraw	113
BHC	85
asmn	4
MSstats	508
prebs	70
deepSNV	161
MVCClass	91
ontoCAT	12
BufferedMatrixMethods	59
frmaTools	73
GRENITS	58
SJava	5
lpNet	65
gmapR	169
hexbin	20
gene2pathway	4
mmnet	9
ccrepe	89
affydata	2
pairseqsim	2
GeneRfold	2
kebabs	147
MBASED	54
metabomxtr	55
metaMS	103
methylPipe	120
flowCL	19
GenomicInteractions	351
GenoView	2
GSReg	61
SNPRelate	1646
geecc	7
CoRegNet	44
Rqc	264
rRDP	63
compEpiTools	70
RUVnormalize	66
TitanCNA	81
miRNAtap	144
netbiov	31
tracktables	116
GeneticsBase	3
gff3Plotter	2
genomation	635
arrayQCplot	2
TRONCO	72
BCRANK	71
AnnotationForge	2486
Gviz	3920
cn.mops	264
AnnotationDbi	36690
tilingArray	144
flowTrans	84
GenomicFeatures	20124
affyQCReport	20
MSnbase	3304
clonotypeR	19
preprocessCore	14166
made4	239
MLP	123
EBImage	2670
Rgraphviz	9965
DEXSeq	1494
goseq	1155
ssize	92
PWMEnrich	162
piano	468
ChemmineR	902
genomes	67
ChIPpeakAnno	990
mdqc	102
MLInterfaces	382
girafe	92
GLAD	229
CNAnorm	65
annaffy	276
antiProfiles	62
affycomp	97
BioNet	279
ddgraph	11
clusterProfiler	17410
proteinProfiles	53
Rbowtie	511
BioMVCClass	59
spikeLI	48
DOSE	17027
mBPCR	59
ExiMiR	59
rBiopaxParser	169
timecourse	72
GOFunction	15
tRanslatome	118
metaSeq	68
PSICQUIC	23
ReportingTools	717
CNORdt	65
coRNAi	12
Agi4x44PreProcess	5
CGEN	64
TurboNorm	62
UniProt.ws	423
HilbertVisGUI	38
wateRmelon	734
flowType	16
CoGAPS	252
procoil	61
EDASeq	1774
Resourcerer	5
motifStack	715
snpMatrix	9
ecolitk	58
GSVA	6009
RTCA	59
Mfuzz	1166
BiGGR	67
keggorthology	142
les	93
lol	11
epigenomix	61
chimera	18
exomePeak	19
spade	11
LVSmiRNA	14
RIPSeeker	25
NormqPCR	173
synapter	93
daMA	57
ReQON	46
GlobalAncova	1090
GeneticsPed	102
deltaGseg	55
affypdnn	15
DFP	55
CNORfuzzy	67
TargetSearch	70
ChemmineOB	338
PANR	57
MMDiff	9
ITALICS	59
flowUtils	40
networkBMA	16
ChromHeatMap	124
cleanUpdTSeq	105
fastseg	758
BrainStars	15
xmapcore	3
GeneOverlap	435
SwimR	11
COHCAP	59
CNEr	3251
MIMOSA	31
iClusterPlus	336
roar	59
GSCA	60
exonmap	3
interactiveDisplayBase	10030
Clomial	54
DMRforPairs	27
ssviz	54
PAA	69
pepStat	51
polyester	122
GOexpress	89
GSAR	87
hiAnnotator	108
ASGSCA	59
regionReport	126
Sushi	62
EnrichmentBrowser	552
FEM	22
unifiedWMWqPCR	53
Rnits	53
SGSeq	313
MLSeq	157
mygene	345
OncoSimulR	60
proBAMr	53
CFAssay	51
edd	3
ontoTools	3
gQTLstats	10
mdgsa	9
limma	31601
gcrma	1374
Rsamtools	23256
annotate	18106
aCGH	214
GOSim	116
Repitools	320
DESeq	196
hypergraph	161
flowMap	46
widgetTools	1277
BitSeq	23
affycoretools	399
spliceSites	15
SplicingGraphs	91
spotSegmentation	12
logicFS	87
plgem	111
minfi	2330
genoset	22
BiSeq	145
bumphunter	2707
arrayQuality	98
AnnotationFuncs	18
altcdfenvs	116
pdInfoBuilder	115
easyRNASeq	180
bioDist	262
SeqVarTools	444
spkTools	53
Category	1913
HELP	57
PROcess	92
flowPhyto	5
OLIN	91
vbmp	74
IPPD	14
SimBindProfiles	54
HTSFilter	222
rama	17
Icens	461
PCpheno	15
CGHbase	439
BayesPeak	17
msmsTests	270
ctc	283
dks	51
RDRToolbox	124
rqubic	83
CNTools	132
snm	166
HTSanalyzeR	17
mgsa	109
ARRmNormalization	57
isobar	83
ReadqPCR	203
Rdisop	465
SIM	53
seqLogo	3581
eiR	67
rfPred	56
a4Base	137
BioSeqClass	16
RDAVIDWebService	33
biocGraph	162
Vega	12
STRINGdb	1143
paircompviz	60
NTW	52
CNVtools	13
cobindR	13
codelink	75
birta	17
GeneGroupAnalysis	3
RWebServices	4
sagenhaft	54
ExpressionView	16
macat	46
OLINgui	56
RbcBook1	77
cghMCR	67
pkgDepTools	22
BaseSpaceR	64
cosmoGUI	3
triform	15
customProDB	83
TSSi	14
iterativeBMA	59
PING	68
qcmetrics	94
Ruuid	4
COMPASS	78
messina	56
Rcpi	121
paxtoolsr	79
MSGFplus	13
oposSOM	77
Pviz	76
quantro	335
GenomicTuples	50
groHMM	72
derfinderHelper	574
derfinder	576
exonfindR	0
FourCSeq	11
csaw	607
VariantFiltering	88
CoverageView	66
MSnID	242
RefNet	13
biocDatasets	2
RMAGEML	3
riboSeq	0
nethet	52
ShortRead	6293
biovizBase	5540
ggbio	2142
zlibbioc	50903
ACME	86
tigre	58
pcaGoPromoter	14
pcaMethods	5250
globaltest	1807
twilight	109
DynDoc	1276
NetSAM	62
TypeInfo	50
beadarray	702
DESeq2	21564
plrs	13
copa	57
maanova	20
gaia	26
eisa	15
flowViz	1058
LPE	89
bioassayR	75
MassArray	53
MassSpecWavelet	1933
geNetClassifier	148
minet	770
ArrayExpress	425
mzR	3459
phyloseq	5434
prada	21
qrqc	24
domainsignatures	12
segmentSeq	62
SeqArray	912
GGBase	17
iPAC	130
iBMQ	48
HEM	53
CorMut	13
DirichletMultinomial	4566
rbsurv	63
trio	99
RNASeqPower	146
joda	13
MiPP	54
a4	86
GWASTools	596
OCplus	80
DriverNet	58
flowFlowJo	6
beadarraySNP	54
imageHTS	23
SAGx	18
metahdep	58
multiscan	54
iChip	53
IdMappingRetrieval	14
SeqGSEA	132
quantsmooth	619
NCIgraph	116
pcot2	15
bgafun	13
miRNApath	65
clst	93
genefu	420
HTqPCR	160
SamSPECTRAL	147
DeconRNASeq	222
PLPE	57
crlmm	238
webbioc	63
gCMAPWeb	14
PADOG	238
spliceR	15
pickgene	51
REDseq	84
fdrame	51
GeneMeta	100
graphite	2969
pvac	54
RTopper	58
h5vc	82
CSSP	29
ChIPseqR	85
Rdbi	3
CORREP	52
flowBeads	61
GEOsubmission	56
RchyOptimyx	14
idiogram	59
mzID	3159
pathifier	124
SBMLR	67
puma	100
GeneRegionScan	63
ChIPsim	87
r3Cseq	88
ArrayExpressHTS	17
ChIPXpress	100
xps	16
PECA	63
splicegear	13
trackViewer	487
simulatorAPMS	3
CRISPRseek	160
BEAT	61
INPower	56
monocle	3047
BiocCheck	1653
switchBox	121
CAFE	71
PSEA	45
Rariant	15
shinyMethyl	106
HDTD	48
ALDEx2	1182
scsR	14
facopy	5
flowCHIC	60
DEGreport	582
viper	700
rpx	243
COSNet	50
IMPCdata	48
missMethyl	964
STATegRa	60
pamr	5
fbat	3
pxr	0
rflowcyt	3
FlowSOM	1077
PROPER	85
OrganismDbi	3231
multtest	12407
SPIA	651
vsn	5302
frma	156
siggenes	3344
cummeRbund	230
GOstats	1731
qvalue	16914
CGHregions	81
RBGL	9466
affyPara	16
biomaRt	23993
clipper	101
geneplotter	7181
affxparser	1583
FunciSNP	14
GeneticsDesign	14
marray	1887
GeneExpressionSignature	68
ArrayTools	18
BAGS	59
bridge	17
msmsEDA	287
GOSemSim	16699
HMMcopy	261
pint	11
occugene	49
chipseq	610
affyContam	100
AGDEX	65
pathRender	60
qusage	396
phenoDist	12
Rtreemix	58
SLqPCR	61
RSVSim	66
sRAP	14
SCAN.UPC	163
copynumber	144
bsseq	1425
SQUADD	45
SRAdb	378
gprege	14
stepNorm	54
MANOR	56
sizepower	62
SigFuge	58
OTUbase	62
flowClust	833
intansv	80
factDesign	55
DSS	931
RPA	104
Streamer	60
TransView	55
genArise	57
aroma.light	1964
ppiStats	16
MmPalateMiRNA	15
diffGeneAnalysis	55
RCASPAR	51
apComplex	65
Starr	14
DBChIP	18
hapFabia	57
inveRsion	16
betr	10
cellHTS2	204
farms	46
BUS	59
iterativeBMAsurv	54
waveTiling	15
hpar	273
attract	73
xmapbridge	55
PICS	113
coGPS	56
nem	18
a4Core	162
flowPlots	58
dagLogo	82
chipenrich	159
dexus	18
Harshlight	70
annmap	115
htSeqTools	16
pRoloc	257
yaqcaffy	15
MCRestimate	14
safe	610
neaGUI	7
RRHO	98
RBioinf	65
FGNet	114
metaArray	14
EasyqpcR	16
MergeMaid	16
plethy	22
MethylSeekR	140
KEGGprofile	22
GraphAT	57
maDB	4
SemSim	2
iFlow	3
savR	28
PhenStat	60
makePlatformDesign	2
M3D	8
CopyNumber450k	7
ChIPQC	331
QDNAseq	383
ABSSeq	116
alsace	16
GenomicFiles	1292
derfinderPlot	145
sangerseqR	898
flowcatchR	59
ClassifyR	285
RUVSeq	935
seqTools	121
SigCheck	56
MGFM	60
mQTL.NMR	5
mvGST	4
NetPathMiner	61
specL	59
NGScopy	7
arrayMagic	2
iSPlot	2
Rintact	2
rgsepd	49
gQTLBase	12
ChromoViz	2
cpvSNP	57
CAMERA	487
VariantAnnotation	9475
affyio	8400
KEGGREST	35595
cleaver	197
GenomicRanges	42136
KEGGgraph	5604
RmiR	14
methylumi	1446
EBcoexpress	77
flowMerge	138
GEOquery	9024
Rcade	20
CNORfeeder	70
gaga	103
AffyRNADegradation	61
maskBAD	60
MeasurementError.cor	51
rhdf5	19596
OutlierD	14
RCytoscape	12
pvca	245
GSEABase	8683
ncdfFlow	1154
matchBox	54
CellNOptR	194
plw	15
NOISeq	557
TCC	194
xcms	1860
maSigPro	254
a4Reporting	117
affyILM	67
agilp	91
sigaR	14
arrayQualityMetrics	498
flowFit	15
staRank	64
qpgraph	182
CGHcall	401
DiffBind	1047
DEGraph	68
metagenomeSeq	1666
categoryCompare	69
snapCGH	105
sscore	31
ternarynet	56
a4Preproc	180
qpcrNorm	62
GenomicAlignments	23873
annotationTools	129
clusterStab	78
GenomeInfoDb	57167
nudge	11
Heatplus	408
goProfiles	124
LBE	242
ConsensusClusterPlus	2963
BiRewire	116
SNPchip	20
ddCt	91
ABarray	75
Rchemcpp	14
GeneNetworkBuilder	76
RNAinteract	78
gaggle	46
gCMAP	15
PAnnBuilder	13
predictionet	14
Risa	58
VegaMC	52
NarrowPeaks	15
HilbertVis	183
tspair	16
goTools	64
RamiGO	11
GEWIST	50
rTRM	142
GeneAnswers	25
exomeCopy	299
BAC	17
flipflop	13
RMAPPER	4
iBBiG	124
PROMISE	102
flowBin	68
rTRMui	63
GOTHiC	89
matchprobes	2
geneRxCluster	56
ELBOW	15
AtlasRDF	9
S4Vectors	54690
MAIT	60
MBAmethyl	41
MEIGOR	56
MethylMix	95
fastLiquidAssociation	55
flowCyBar	54
Pbase	10
Polyfit	9
pRolocGUI	85
proteoQC	9
rain	91
hiReadsProcessor	57
BridgeDbR	78
UNDO	72
SemDist	46
DupChecker	6
MPFE	45
ToPASeq	8
RTools4TB	2
AnnBuilder	2
RSNPper	2
saps	3
BeadExplorer	2
SAGElyzer	2
QuartPAC	61
AnalysisPageServer	8
DNAcopy	5164
BiocGenerics	55699
affyPLM	1198
graph	18565
edgeR	22976
oligoClasses	1678
rtracklayer	21395
MotIV	29
lmdme	54
EBSeq	412
OrderedList	80
simpleaffy	98
rols	425
ROntoTools	215
lumi	1124
logitT	33
DEDS	14
MEDIPS	111
mcaGUI	14
VanillaICE	182
ASEB	57
CALIB	15
SPEM	72
BADER	63
seqbias	76
plateCore	14
cn.farms	64
GeneSelector	14
baySeq	416
BRAIN	110
CRImage	81
panp	58
rnaSeqMap	16
SLGI	16
supraHex	424
flowStats	523
ROC	1027
bgx	65
GSEAlm	80
explorase	14
MantelCorr	50
SpacePAC	96
IdMappingAnalysis	12
GraphAlignment	59
makecdfenv	173
casper	62
cancerclass	78
CNORode	93
DAVIDQuery	7
inSilicoMerging	14
DASiR	8
SMAP	45
HiTC	135
trigger	62
parody	100
R453Plus1Toolbox	65
vtpnet	72
GENE.E	12
MinimumDistance	66
motifRG	15
flowQB	17
RTN	172
tkWidgets	1277
MineICA	75
RefPlus	41
RLMM	53
BGmix	24
charm	15
Rsubread	2246
flowFP	159
QUALIFIER	15
Rmagpie	55
AffyTiling	9
KEGGSOAP	6
MiRaGE	60
RpsiXML	20
NuPoP	71
RedeR	334
AnnotationHub	11212
DART	62
HCsnip	11
phenoTest	136
CNVrd2	62
Clonality	30
PGSEA	50
GGtools	19
netresponse	70
clippda	62
PREDA	85
methylMnM	75
ibh	53
maCorrPlot	56
CGHnormaliter	67
LiquidAssociation	82
HybridMTest	130
XDE	64
PathNet	67
iASeq	52
RMassBank	101
Genominator	16
randPack	56
DrugVsDisease	136
flowMatch	69
HTSeqGenie	54
biosvd	13
massiR	59
metaseqR	19
FRGEpistasis	57
compcodeR	86
CompGO	13
COPDSexualDimorphism	3
DOQTL	10
seqplots	12
GOsummaries	56
nondetects	66
ASSIGN	109
ballgown	642
sapFinder	14
erccdashboard	65
flowClean	204
flowDensity	264
focalCall	6
MSGFgui	10
npGSEA	59
RGSEA	67
systemPipeR	1187
EBSeqHMM	50
IdeoViz	66
MoPS	7
GeneSpring	3
msQC	0
BiocInstaller	463
impute	10460
gage	802
LPEadj	44
XVector	47755
Biostrings	45403
lapmix	52
flowWorkspace	1302
a4Classif	115
reb	13
DEGseq	163
chopsticks	93
convert	148
Cormotif	58
survcomp	1051
pathview	4338
fmcsR	269
MBCB	54
EBarrays	226
oligo	1603
splots	208
OSAT	66
CancerMutationAnalysis	15
microRNA	159
affylmGUI	84
maigesPack	44
hopach	311
plier	116
TEQC	68
rSFFreader	10
arrayMvout	61
oneChannelGUI	13
adSplit	70
AllelicImbalance	101
rMAT	12
ScISI	20
SomatiCA	10
LMGene	14
methyAnalysis	20
iontree	12
prot2D	12
sSeq	175
flowPeaks	180
cellHTS	11
DNaseR	5
GSRI	60
manta	14
CexoR	63
epivizr	120
cellGrowth	13
inSilicoDb	13
BiocStyle	6404
shinyTANDEM	13
TargetScore	66
gpls	168
cqn	287
DTA	86
virtualArray	6
SSPA	65
mosaics	137
genoCN	55
rGADEM	280
chroGPS	14
rHVDM	13
bigmemoryExtras	15
dualKS	16
stepwiseCM	10
ffpe	71
interactiveDisplay	103
RdbiPgSQL	2
SpeCond	71
RGalaxy	16
rTANDEM	17
tweeDEseq	136
methVisual	14
gwascat	598
maPredictDSC	60
externalVector	3
SANTA	55
nnNorm	58
GeneGA	46
biomvRCNS	56
openCyto	675
pdmclass	11
GraphPAC	102
Mulcom	75
dyebias	60
flowQ	10
SomaticSignatures	179
Mirsynergy	12
PatientGeneSets	2
GeneR	4
GeneTraffic	3
MeSHDbi	264
meshr	141
Metab	27
metagene	32
MethylAid	90
EDDA	16
gaucho	11
DMRcate	836
ChIPseeker	1802
pepXMLTab	59
Basic4Cseq	64
blima	56
riboSeqR	47
simulatorZ	9
wavClusteR	61
cosmiq	58
MultiMed	53
TSCAN	613
STAN	15
Rredland	2
AIMS	428
stam	2
keggorth	2
GeneTS	2
gespeR	86
BEclear	70
diffHic	107
ENCODExplorer	8
EMDomics	68
GENESIS	340
BrowserVizDemo	3
RCyjs	72
podkat	54
INSPEcT	68
traseR	51
caOmicsV	8
dupRadar	106
EnrichedHeatmap	559
lfa	292
goCluster	1
SICtools	46
DAPAR	130
dcGSA	51
TimerQuant	0
R4RNA	628
FISHalyseR	51
birte	7
CAnD	10
CODEX	103
FlowRepositoryR	10
seqPattern	652
SIMAT	54
SVM2CRM	7
TIN	51
TPP	94
mAPKL	12
RareVariantVis	62
OperaMate	4
ChIPComp	62
erma	95
Path2PPI	59
rCGH	110
AnnotationHubData	370
GEOsearch	4
Imetagene	8
hierGWAS	56
exprExternal	1
Prostar	76
RCy3	945
systemPipeRdata	0
globalSeq	53
coMET	86
edge	99
gdsfmt	2100
R3CPET	55
BrowserViz	174
gtrellis	129
InPAS	59
LEA	516
LowMACA	17
parglms	51
sidap	0
CausalR	64
ldblock	78
mmgmos	1
mtbls2	0
Oscope	88
RTCGA	541
miRcomp	53
eudysbiome	46
FindMyFriends	11
gcatest	55
Cardinal	170
ComplexHeatmap	13984
DMRcaller	81
SELEX	54
sigsquared	51
MeSHSim	3
regioneR	2049
rGREAT	652
msa	1532
MethTargetedNGS	50
OmicsMarkeR	8
TCGAbiolinks	3557
widgetInvoke	2
LOLA	305
ProteomicsAnnotationHubData	10
SNPhood	58
GeneBreak	64
Guitar	132
HilbertCurve	88
DChIPRep	9
multiClust	86
cogena	85
seq2pathway	111
sincell	59
similaRpeak	59
rcellminer	65
Rhtslib	24360
pwOmics	106
immunoClust	66
mogsa	172
pandaR	126
RTCGAToolbox	573
mirIntegrator	66
rnaseqcomp	59
bim	1
variancePartition	947
LedPred	46
TarSeqQC	13
motifbreakR	213
ABAEnrichment	11
SISPA	29
GUIDEseq	78
CNPBayes	7
GenomeBase	1
rfcdmin	1
scde	339
FamAgg	74
canceR	86
chromDraw	55
CopywriteR	25
soGGi	329
ggtree	20182
SummarizedExperiment	38282
GoogleGenomics	6
HIBAG	129
NanoStringQCPro	44
muscle	321
pmm	45
acde	65
IONiseR	70
XBSeq	9
genotypeeval	15
iSNetwork	2
destiny	683
applera	1
reposTools	1
sbgr	2
biobroom	191
DNABarcodes	167
MEAL	80
SWATH2stats	59
SNAData	2
lpsymphony	1143
kimod	6
normalize450K	48
bamsignals	1119
ENmix	207
ensembldb	9947
flowVS	101
skewr	43
ProtGenerics	11757
RBM	57
RnaSeqSampleSize	91
RnBeads	287
netbenchmark	8
PGA	11
ropls	1199
DeMAND	51
miRLAB	64
OGSA	7
iGC	51
NanoStringDiff	92
iCheck	54
myvariant	84
pathVar	25
SEPA	6
biomformat	5469
iCOBRA	164
BioQC	116
profileScoreDist	48
BubbleTree	69
conumee	156
cytofkit	24
diggit	52
RUVcorr	58
RNAprobR	7
GreyListChIP	973
IVAS	79
MatrixRider	61
ELMER	178
CNVPanelizer	59
fCI	52
synlet	49
metaX	3
Prize	8
DiffLogo	64
subSeq	69
metagenomeFeatures	9
BBCAnalyzer	58
RiboProfiling	80
y2hStat	1
consensusSeekeR	103
transcriptR	68
dada2	2224
Mergeomics	63
contiBAIT	52
SwathXtend	62
CrispRVariants	132
splineTCDiffExpr	1
PanVizGenerator	10
HDF5Array	12703
scran	4708
AneuFinder	85
DRIMSeq	307
epivizrServer	146
miRNAmeConverter	57
ImmuneSpaceR	62
maftools	2561
Linnorm	222
Director	45
MADSEQ	54
SNPediaR	51
netprioR	49
RCAS	128
covRNA	54
SPLINTER	57
MoonlightR	71
psichomics	71
yamss	60
flowPloidy	63
fCCAC	54
CancerInSilico	18
samExploreR	8
doppelgangR	122
iCARE	113
IHW	722
GSALightning	53
SMITE	56
ggcyto	911
debrowser	178
DEFormats	261
MultiDataSet	1215
ExpressionAtlas	161
pbcmc	5
fgsea	16498
ImpulseDE	6
ASAFE	49
LymphoSeq	64
qsea	65
geneplast	93
FunChIP	54
MODA	55
eegc	80
CancerSubtypes	108
LINC	8
SIMLR	254
KEGGlincs	68
MAST	2033
StarBioTrek	53
GOpro	115
chimeraviz	105
EWCE	140
tximport	3325
scater	6774
ExperimentHubData	295
MethPed	52
cellity	62
tofsims	9
clustComp	62
EGAD	63
EGSEA	138
epivizrStandalone	61
genphen	9
MMDiff2	50
Glimma	1216
isomiRs	123
CINdex	70
CytoML	464
normr	134
BiocWorkflowTools	179
alpine	45
philr	183
proFIA	13
yarn	135
anamiR	8
CCPROMISE	62
BUMHMM	52
ramwas	125
EpiCluster	0
PCAN	59
JunctionSeq	13
OncoScore	56
flowAI	561
DeepBlueR	45
diffloop	29
ASpli	102
ISoLDE	44
clusterExperiment	352
ccmap	75
MetaboSignal	117
YAPSA	80
recount	405
GRmetrics	85
gCrisprTools	59
M3Drop	594
matter	208
TVTB	60
synergyfinder	184
bigmelon	63
DelayedArray	43080
sparseDOSSA	36
gcapc	55
coseq	113
GenVisR	293
psygenet2r	70
sscu	49
CountClust	11
EBSEA	49
epivizrData	129
AMOUNTAIN	93
methylKit	640
BatchQC	107
pcaExplorer	473
pqsfinder	75
QUBIC	136
chromstaR	87
MetCirc	69
rDGIdb	77
covEB	49
geneAttribution	52
annotatr	477
clusterSeq	42
chromPlot	135
garfield	54
nucleoSim	57
cellTree	14
ExperimentHub	7471
sevenbridges	64
EmpiricalBrownsMethod	130
dSimer	7
ROTS	207
LOBSTAHS	54
oppar	61
BgeeDB	117
Uniquorn	56
CVE	6
esetVis	73
MGFR	64
CellMapper	62
switchde	57
statTarget	96
IWTomics	52
geneXtendeR	109
phosphonormalizer	49
BaalChIP	59
uSORT	48
MutationalPatterns	334
HelloRanges	133
MWASTools	150
RJMCMCNucleosomes	55
RImmPort	47
QuaternaryProd	74
bacon	105
MBttest	51
metaCCA	190
Chicago	92
biosigner	82
CHRONOS	56
ClusterSignificance	56
recoup	54
SpidermiR	79
ctsGE	58
PureCN	161
Harman	167
GMRP	52
crossmeta	167
IPO	120
bioCancer	72
GeneGeneInteR	55
BayesKnockdown	55
MultiAssayExperiment	5160
Pigengene	118
NetCRG	0
PharmacoGx	273
GAprediction	51
Anaquin	57
SVAPLSseq	7
treeio	19780
meshes	149
readat	8
regsplice	50
DEsubs	57
FitHiC	61
RnaSeqGeneEdgeRQL	2
DNAshapeR	75
RGraph2js	53
BasicSTARRseq	56
GenRank	7
splineTimeR	66
SC3	394
odseq	65
CONFESS	60
InteractionSet	1858
GEM	57
BadRegionFinder	56
genbankr	120
GenoGAM	10
msPurity	77
sights	54
signeR	74
SRGnet	7
PathoStat	66
Pi	71
BPRMeth	91
crisprseekplus	29
GRridge	15
scDD	139
scone	109
cellscape	42
timescape	76
Organism.dplyr	427
pathprint	7
RTNduals	81
TSRchitect	11
Logolas	8
ideal	105
goSTAG	60
IntEREst	67
basecallQC	66
GenomicDataCommons	1167
MaxContrastProjection	8
flowTime	63
EpiDISH	586
beachmat	15225
IntramiRExploreR	49
seqcombo	53
mfa	82
TFARM	48
ANF	51
cbaf	60
MetaCyto	74
esATAC	91
gep2pep	52
omicsPrint	53
LineagePulse	40
rqt	53
netReg	8
PPInfer	118
swfdr	58
heatmaps	239
branchpointer	73
banocc	73
DMRScan	48
metavizr	13
GA4GHclient	108
geneClassifiers	50
SCnorm	93
SingleCellExperiment	14704
oneSENSE	19
coexnet	13
diffuStats	67
CEMiTool	140
geoquery	0
miRsponge	6
amplican	81
trena	39
seqCAT	56
ivygapSE	50
biobase	1
restfulSE	109
affyplm	0
chromswitch	27
PROPS	52
transcriptogramer	60
rhvdm	0
REMP	69
splatter	425
STROMA4	30
twoddpcr	55
motifcounter	57
hicrep	11
BioCor	81
ChIPexoQual	65
methInheritSim	62
Rhdf5lib	23474
BiocSklearn	72
DASC	2
TReNA	2
Scale4C	45
GA4GHshiny	64
motifmatchr	1335
RVS	50
InterMineR	64
AUCell	2188
ChIPanalyser	54
TFHAZ	52
iterClust	46
methyvim	8
multiMiR	223
oncomix	49
vulcan	64
EventPointer	64
MIGSA	14
semisup	48
AnnotationFilter	10437
TCseq	155
ATACseqQC	344
methylInheritance	64
scmap	259
epivizrChart	57
miRBaseConverter	117
phenopath	88
ndexr	70
panelcn.mops	81
SeqSQC	86
openPrimeRui	62
ontoProc	223
iranges	1
biostrings	0
TnT	43
runibic	78
rhdf5client	144
tenXplore	52
stageR	180
sampleClassifier	54
GISPA	45
RITAN	62
RIVER	51
discordant	83
multiOmicsViz	42
NADfinder	58
IMAS	58
karyoploteR	877
CATALYST	476
GenomicScores	641
epiNEM	146
IsoformSwitchAnalyzeR	258
HiCcompare	289
GENIE3	1178
zFPKM	111
cytolib	2802
SPONGE	57
DEP	489
apeglm	3412
chromVAR	1104
openPrimeR	127
PathwaySplice	6
topdownr	74
scPipe	134
pcxn	49
TFEA.ChIP	67
TCGAbiolinksGUI	26
pgca	48
RaggedExperiment	921
ImpulseDE2	12
MCbiclust	53
OPWeight	51
RTNsurvival	61
rexposome	103
scoreInvHap	57
Rbowtie2	308
Onassis	10
MSstatsQC	76
BASiCS	167
scfind	6
TMixClust	63
DelayedMatrixStats	16244
bnbc	116
anota2seq	75
JASPAR2018	3
methimpute	58
loci2path	49
MAGeCKFlute	370
annbuilder	0
mimager	64
funtooNorm	60
cydar	86
DaMiRseq	120
BiocFileCache	26080
biotmle	60
consensusOV	111
M3C	691
miRmine	34
Doscheda	60
MIRA	123
shortread	0
flowclust	1
GOfuncR	283
mapscape	51
POST	8
msgbsR	66
BioMedR	3
BLMA	69
wiggleplotr	167
cellbaseR	72
zinbwave	877
RProtoBufLib	2722
ClusterJudge	53
microbiome	1649
DMCHMM	52
IrisSpatialFeatures	3
slalom	103
bsgenome	0
progeny	410
mpra	57
bcSeq	60
MetaNeighbor	91
signet	7
biocinstaller	2
enrichplot	17022
mCSEA	105
srnadiff	53
singscore	1254
RSeqAn	81
igvR	110
InTAD	53
CHARGE	6
CAGEfightR	158
decontam	1652
MSstatsQCgui	45
Rmmquant	48
miRSM	41
LRBaseDbi	114
MetaGxOvarian	2
CellTrails	55
ipdDb	104
DEqMS	225
appreci8R	99
MPRAnalyze	61
annotationdbi	1
compartmap	35
dnacopy	1
rScudo	51
pogos	60
hipathia	124
FELLA	128
sevenC	50
singleCellTK	247
SummarizedBenchmark	51
dmrseq	198
phantasus	145
perturbatr	7
slingshot	1458
scruff	66
CAMTHC	4
methylGSA	107
SIMD	50
plpe	0
sparsenetgls	48
RNASeqR	8
tRNAdbImport	113
ProteoMM	77
artMS	79
COCOA	68
HiCBricks	151
rbgl	1
tkwidgets	1
genomicfeatures	1
DelayedDataFrame	64
deco	10
seqlogo	0
DropletUtils	2613
omicplotR	59
TissueEnrich	156
iCNV	53
iSEE	465
rWikiPathways	390
SEPIRA	27
SIAMCAT	113
SparseSignatures	55
kissDE	59
DominoEffect	57
ccfindR	91
tximeta	1144
MetID	54
onlineFDR	46
GeneAccord	8
hierinf	44
countsimQC	139
topgo	0
levi	45
PrecisionTrialDrawer	7
RGMQL	49
ChIPSeqSpike	9
RcisTarget	838
Trendy	58
CytoDx	68
coRdon	170
Rgin	7
GDSArray	132
kmknn	0
RNAdecay	38
PowerExplorer	7
GSEABenchmarkeR	81
martini	55
mdp	56
HPAanalyze	124
NormalyzerDE	160
OMICsPCA	61
FCBF	44
IsoCorrectoR	98
snpmatrix	1
LoomExperiment	591
MTseeker	3
BiocVersion	58754
netSmooth	61
maser	122
Sconify	54
TCGAutils	835
tRNAscanImport	74
TxRegInfra	7
strandCheckR	52
plyranges	1242
powerTCR	382
hmdbQuery	71
DEsingle	247
diffcyt	351
Ularcirc	63
ACE	87
OUTRIDER	208
roma	1
GIGSEA	45
ERSSA	49
glmSparseNet	138
bayNorm	80
KinSwingR	54
MSstatsTMT	280
transite	55
universalmotif	515
abseqR	56
degseq	1
DNABarcodeCompatibility	45
ADAM	114
decompTumor2Sig	128
IsoCorrectoRGUI	60
scTensor	123
genomicranges	0
MACPET	9
DEScan2	65
GARS	58
GateFinder	59
ChIC	19
SDAMS	54
seqsetvis	65
TFutils	75
vidger	97
diffcoexp	176
missRows	50
multiHiCcompare	181
condcomp	3
qPLEXanalyzer	71
REBET	45
SCBN	80
BiocNeighbors	10285
INDEED	46
pkgdeptools	0
tRNA	140
mixOmics	2831
PepsNMR	118
DEComplexDisease	10
BEARscc	54
omicRexposome	56
GDCRNATools	297
iteremoval	8
CTDquerier	53
brainImageR	2
BiocOncoTK	75
TTMap	47
adaptest	6
RandomWalkRestartMH	110
IMMAN	49
drawProteins	185
OmaDB	191
MDTS	46
EnhancedVolcano	4249
mlm4omics	3
iasva	49
NBSplice	10
nuCpos	50
MetNet	52
ExCluster	44
edger	1
XINA	44
AffiXcan	55
breakpointR	61
FoldGO	30
QSutils	64
Wrench	1649
BDMMAcorrect	35
cTRAP	61
gostats	1
bayseq	0
cntools	0
gsean	59
scFeatureFilter	50
CellScore	51
ddPCRclust	71
celaref	71
GeneStructureTools	77
scmeth	69
ASICS	82
BiFET	57
BioNetStat	66
ORFik	204
slinky	6
BUScorrect	50
sigFeature	207
icetea	54
plotGrouper	49
FastqCleaner	81
gwasurvivr	83
sesame	659
consensus	50
primirTSS	58
BiocPkgTools	164
gpart	16
NeighborNet	24
cicero	212
HIREewas	49
TimeSeriesExperiment	10
consensusDE	68
AssessORF	54
category	1
rgraphviz	1
VCFArray	59
logitt	1
SMAD	48
batchelor	3821
CNVRanger	125
epihet	9
qckitfastq	57
DeMixT	98
scMerge	494
CellMixS	80
miRspongeR	40
netboost	43
PoTRA	7
TNBC.CMS	52
SpatialCPie	72
scRecover	57
RNAmodR	113
SQLDataFrame	50
TOAST	384
deltaCaptureC	48
AlphaBeta	55
Autotuner	7
gramm4R	4
idr2d	52
ASpediaFI	8
scPCA	89
CNVfilteR	59
HCAExplorer	3
BiocSingular	11977
alevinQC	84
DiscoRhythm	62
metagene2	67
proBatch	32
fishpond	281
GNET2	52
Rcwl	104
RCM	62
Structstrings	157
survtype	52
SubCellBarCode	53
profileplyr	229
ngsReports	74
RNAmodR.AlkAnilineSeq	60
scGPS	55
gpuMagic	50
scBFA	56
SingleR	3868
brendaDb	51
MOSim	50
muscat	419
CrossICC	3
DMCFB	42
MMUPHin	114
scTGIF	139
biscuiteer	66
mitch	65
arrayexpress	1
geometadb	0
bigPint	37
CHETAH	98
TPP2D	52
evaluomeR	50
MOFA	6
phemd	36
qsmooth	129
VennDetail	223
XCIR	5
Maaslin2	1011
SharedObject	150
oppti	45
ssPATHS	43
MACSQuantifyR	44
onechannelgui	0
selectKSigs	48
Rhisat2	219
RcwlPipelines	95
PrInCE	58
SpectralTAD	78
adductomicsR	54
infercnv	1062
topconfects	168
celda	665
CoRegFlux	3
PAST	46
pipeFrame	167
Modstrings	210
PAIRADISE	80
ssrch	78
KnowSeq	57
AWFisher	58
SigsPack	50
calm	44
GenomicOZone	57
pwrEWAS	29
cliqueMS	107
methylCC	71
tradeSeq	501
flowSpy	4
microbiomeDASim	56
MethCP	8
MSstatsSampleSize	21
RNAsense	44
debCAM	61
rsamtools	0
cytofast	6
OVESEG	48
mnem	152
atSNP	70
sRACIPE	62
DepecheR	136
GAPGOM	8
pram	47
OmicsLonDA	22
pathwayPCA	75
animalcules	109
HCABrowser	5
SynMut	47
MetaVolcanoR	56
circRNAprofiler	71
SCANVIS	59
proDA	232
sojourner	11
ReactomeGSA	221
fcoex	76
flowSpecs	68
cummerbund	1
gscreend	46
brainflowprobes	49
BiocSet	241
blacksheepr	58
SAIGEgds	61
geneticsbase	0
arrayqualitymetrics	0
chippeakanno	0
iterativebmasurv	0
AMARETTO	117
BioMM	21
CellBench	131
StructuralVariantAnnotation	213
Melissa	50
cola	126
graper	49
dcanr	123
hypeR	79
rmelting	67
sitePath	56
enrichTF	69
RepViz	106
gemini	51
HiLDA	69
SBGNview	157
MMAPPR2	18
RNAmodR.ML	52
fcScan	53
VariantExperiment	49
IgGeneUsage	48
schex	230
LinkHD	48
methrix	82
scDblFinder	1392
GmicR	67
OmnipathR	521
MEB	49
ALPS	5
SEtools	130
DEWSeq	55
gseabase	0
ceRNAnetsim	47
MBQN	53
CluMSID	66
HumanTranscriptomeCompendium	49
GladiaTOX	47
BANDITS	107
divergence	44
lipidr	189
NBAMSeq	84
scAlign	16
projectR	109
CopyNumberPlots	152
TreeSummarizedExperiment	1565
mbkmeans	448
nanotatoR	101
RNAmodR.RiboMethSeq	55
ncGTW	43
PhyloProfile	75
BUSpaRse	194
pulsedSilac	6
signatureSearch	218
BioTIP	69
Spaniel	77
waddR	52
netboxr	9
widgettools	1
biomart	0
PCAtools	1181
ADAMgui	89
doseR	47
scds	493
Xeva	59
ViSEAGO	124
Qtlizer	50
APAlyzer	69
PERFect	40
peakPantheR	58
lionessR	52
GCSscore	24
target	47
PeacoQC	218
rhdf5filters	18917
AnVIL	590
dearseq	165
DIAlignR	56
scTHI	45
ANCOMBC	1229
SCATE	77
FScanR	23
ROSeq	47
methylSig	73
spqn	47
eisaR	106
Rfastp	137
structToolbox	105
wpm	54
rfaRm	43
uncoverappLib	55
hummingbird	43
escape	341
tomoda	42
FilterFFPE	46
tidySingleCellExperiment	196
mina	44
BumpyMatrix	553
bnem	59
ttgsea	82
mumosa	71
PoDCall	47
parallel	1
tcltk	1
sigpathway	0
basilisk.utils	4195
MouseFM	100
multiGSEA	108
combi	57
cytomapper	315
dpeak	24
BgeeCall	48
CARNIVAL	141
RadioGx	63
SpatialExperiment	1804
ctgGEM	5
DAMEfinder	56
metaseqR2	54
metabolomicsWorkbenchR	78
weitrix	50
UMI4Cats	57
sparseMatrixStats	15488
TBSignatureProfiler	67
SimFFPE	43
transomics2cytoscape	49
GGPA	45
multicrispr	57
RIPAT	26
simplifyEnrichment	744
peco	48
RNAAgeCalc	70
QFeatures	1507
MultiBaC	65
aggregateBioVar	69
ExperimentSubset	55
facets	0
base	1
calib	0
grDevices	1
AlpsNMR	65
bambu	281
AnVILBilling	51
dasper	18
CellaRepertorium	54
GWAS.BAYES	49
densvis	3110
SplicingFactory	42
simpleSingleCell	0
CNVgears	28
brew	62
RColorBrewer	15
UTAR	0
omicsmarker	0
prostar	0
rlang	344
vasp	3
PubScore	5
Dune	46
Nebulosa	1006
MsCoreUtils	3623
scry	235
SingleCellSignalR	254
RegEnrich	101
tidybulk	196
BiocIO	19399
packFinder	52
scDataviz	80
idpr	67
SPsimSeq	134
TADCompare	79
rsemmed	44
FRASER	109
Rtpca	45
receptLoss	42
zellkonverter	1068
BiocDockerManager	20
ChromSCape	66
ISAnalytics	55
SpatialDecon	176
vcfR	1
BSgenome.Hsapiens.UCSC.hg19	6
datasets	1
grid	1
NewWave	116
MSEADbi	4
ADImpute	72
VERSO	48
GSgalgoR	48
flowGraph	50
stats	1
magrittr	22
KEGG.db	1
graphat	1
dittoSeq	1407
CoreGx	364
CSSQ	48
glmGamPoi	3921
pageRank	53
ROCpAI	43
tscR	19
ribor	47
ribosomeProfilingQC	79
distinct	214
HIPPO	48
spicyR	184
proActiv	62
frenchFISH	42
MSPrep	106
DegNorm	57
ncRNAtools	48
MSstatsTMTPTM	4
biocthis	224
marr	45
megadepth	119
famat	58
MSstatsConvert	484
NanoMethViz	80
DEXICA	0
RLassoCox	50
PFP	16
dichromat	2
sendmailR	2
sarks	44
easyreporting	52
scMAGeCK	8
preciseTAD	57
MatrixGenerics	40002
ResidualMatrix	3429
CiteFuse	91
cmapR	403
TreeAndLeaf	129
rrvgo	442
SCOPE	55
GCSFilesystem	6
BrainSABER	7
BRGenomics	148
scCB2	53
scClassify	75
TAPseq	55
SeqGate	43
PloGO2	65
struct	148
SynExtend	52
pipeComp	52
GCSConnection	5
scHOT	65
optimalFlow	57
Omixer	52
HPAStainR	16
exomePeak2	101
ggtreeExtra	1018
flowCut	103
BayesSpace	225
MethReg	68
VplotR	54
microbiomeExplorer	74
MSstatsPTM	198
AnVILPublish	52
MOGAMUN	50
SCFA	46
string	1
methods	1
musicatk	78
tidySummarizedExperiment	316
VarCon	43
tools	1
utils	1
GenomicDistributions	91
GO.db	15
Homo.sapiens	5
degraph	1
pga	0
hicbricks	0
biobtreeR	51
periodicDNA	48
Spectra	1569
netDx	47
fmrs	117
HCAMatrixBrowser	3
ToxicoGx	66
sangeranalyseR	174
reconsi	51
clustifyr	136
snapcount	56
corral	75
NoRCE	52
PhosR	102
EnMCB	51
MesKit	69
CytoTree	15
EpiTxDb	84
GeneTonic	258
customCMPdb	53
ILoReg	44
systemPipeShiny	60
rstudio	1
GenomeInfoDbData	20
compiler	1
org.Hs.eg.db	15
moanin	120
ReactomeContentService4R	103
splines	1
stats4	1
labeling	140
geneLenDataBase	10
hgu133plus2.db	7
scuttle	9809
cBioPortalData	439
GWENA	178
LACE	110
snifter	136
TileDBArray	55
rSWeeP	46
infinityFlow	67
timeOmics	71
NPARC	54
MEAT	45
velociraptor	118
ExploreModelMatrix	153
OpenStats	48
recountmethylation	63
padma	45
POMA	76
GSEAmining	63
gmoviz	52
TimiRGeN	61
spatialHeatmap	154
Informeasure	39
rnaEditr	50
graphics	1
lefser	576
cfDNAPro	56
affio	0
BSgenome.Hsapiens.UCSC.hg38	11
censcyt	58
GEOfastq	67
nempi	58
CAEN	44
cindex	0
basilisk	4639
CeTF	81
MOMA	55
msImpute	114
MicrobiotaProcess	501
bluster	4992
nearBynding	49
randRotation	43
regutools	60
GPA	51
rebook	171
pmp	118
iSEEu	114
scp	128
getDEE2	48
Herper	158
metabCombiner	56
recount3	303
MOFA2	443
scRepertoire	387
metapod	4721
shinyepico	65
bitops	8
PFAM.db	11
TxDb.Hsapiens.UCSC.hg19.knownGene	6
ga4ghclient	0
drugTargetInteractions	58
autonomics	50
RCSL	35
diffUTR	49
interacCircos	61
barcodetrackR	54
PhIPData	97
RiboDiPA	51
HubPub	116
csawBook	4
scAnnotatR	127
svaRetro	58
awst	50
veloviz	48
OSCA.basic	21
VAExprs	44
ebimage	1
coMethDMR	55
rprimer	72
BOBaFIT	56
ichorCNA	0
mia	1460
SOMNiBUS	55
lisaClust	135
systemPipeTools	50
cosmosR	65
POWSC	59
sechm	151
Rbec	53
ReactomeGraph4R	44
DelayedRandomArray	90
scShapes	45
rGenomeTracks	40
imcRtools	186
ggspavis	147
MicrobiomeProfiler	104
Cepo	161
epistack	50
ODER	14
biodbLipidmaps	42
TargetDecoy	44
genomicInstability	48
mosbi	48
cageminer	58
deconvR	66
cliProfiler	48
ggmanh	113
CNVMetrics	49
crisprBase	160
mulcom	0
IlluminaHumanMethylation450kmanifest	5
VGAM	15
ramr	45
GeomxTools	402
decoupleR	978
miQC	108
dir.expiry	4142
MQmetrics	41
HGC	61
MungeSumstats	1006
vissE	97
planet	182
memes	184
cyanoFilter	51
XNAString	50
hca	65
MsBackendMassbank	75
fobitools	48
GEOexplorer	61
mitoClone2	56
FindIT2	55
scanMiR	77
BioPlex	4
DelayedTensor	50
m6Aboost	42
pengls	42
MsBackendRawFileReader	60
biodbKegg	66
biodbUniprot	50
synapsis	42
GeoDiff	76
pairkat	41
BentoBox	0
hermes	91
netZooR	60
GBScleanR	43
SCArray	78
dce	66
PhenoGeneRanker	41
wppi	46
MSstatsLOBD	47
BloodGen3Module	119
KBoost	44
treekoR	57
Travel	4
spatialDE	103
condiments	91
traviz	57
CytoGLMM	97
cbpManager	53
methylclock	148
OSCA	5
OSCA.advanced	19
ProteoDisco	51
iPath	42
sparrow	107
NxtIRFcore	16
scTreeViz	49
FLAMES	76
InteractiveComplexHeatmap	380
methylscaper	51
CNViz	53
tricycle	212
midasHLA	53
rawrr	202
epidecodeR	46
conclus	6
supersigs	42
MACSr	104
mirTarRnaSeq	62
cellmigRation	47
MsBackendMgf	459
DExMA	62
epigraHMM	55
transformGamPoi	69
segmenter	55
MSstatsLiP	74
enhancerHomologSearch	56
biodbHmdb	59
txcutr	45
nullranges	163
Dino	55
CONSTANd	49
BioNERO	256
OSCA.workflows	37
OSCA.intro	61
TrajectoryUtils	1867
CIMICE	51
NanoStringNCTools	391
HiCDCPlus	77
fedup	50
geva	43
MatrixQCvis	117
CelliD	251
msqrob2	116
fgga	48
Summix	39
scClassifR	3
GenomicSuperSignature	56
TrajectoryGeometry	40
multiSight	69
spiky	45
ORFhunteR	52
FEAST	113
SingleMoleculeFootprinting	52
quantiseqr	444
svaNUMT	57
NeuCA	36
scanMiRApp	58
ggmsa	512
metapone	64
NanoTube	82
orthogene	327
KaryoploteR	0
spatzie	47
benchdamic	86
netOmics	40
RLSeq	36
BUSseq	48
surfaltr	44
RiboCrypt	51
CyTOFpower	52
dStruct	46
BSgenome.Hsapiens.NCBI.GRCh38	1
scatterHatch	41
sccomp	95
clusterprofiler	1
MAGAR	170
MetaboCoreUtils	1337
LRcell	50
satuRn	266
immunotation	50
MsFeatures	1705
TraRe	6
mistyR	87
miloR	267
sitadela	47
airpart	57
plotgardener	337
tripr	48
biodb	195
miaSim	97
atena	110
easier	134
bugsigdbr	166
scReClassify	45
bayespeak	0
mfuzz	0
targetsearch	0
ScaledMatrix	11879
miaViz	244
VaSP	57
DeepPINCS	81
ModCon	42
epialleleR	57
granulator	117
PDATK	83
tLOH	46
IRISFGM	78
ptairMS	49
ppcseq	48
monaLisa	131
tanggle	62
ComPrAn	43
InterCellar	76
SingleRBook	3
csdR	46
MAI	55
HPiP	50
biodbChebi	83
microbiomeMarker	376
CellBarcode	63
BindingSiteFinder	56
OSCA.multisample	21
TRESS	96
rmspc	54
cytoKernel	45
Cogito	47
PanomiR	65
single	42
CompoundDb	332
mbOmic	15
MuData	56
ASURAT	63
scMET	49
RedisParam	43
omada	40
BiocBaseUtils	5497
rsconnect	48
phenomis	55
plyr	132
webshot	30
memoise	16
evaluate	294
geosphere	12
sticky	1
terra	41
raster	31
polysat	0
FuseSOM	52
MASS	235
BiocManager	205
Matrix	318
htmltools	283
globals	34
susieR	20
checkmate	147
devtools	36
packrat	36
pkgload	225
formatters	3
bookdown	38
FDb.InfiniumMethylation.hg19	5
gtable	145
future.apply	112
uwot	47
aplot	35
RPostgres	23
waiter	10
Rsolnp	2
R.rsp	1
samr	6
restfulr	9
kpmt	0
hdrcde	6
colorRamps	10
IlluminaHumanMethylationEPICanno.ilm10b4.hg19	5
FlowSorted.CordBloodCombined.450k	10
org.Rn.eg.db	10
ccdata	10
lsa	8
coloc	19
RcppAnnoy	40
JASPAR2020	6
tidytree	42
sparklyr	12
rpart	63
xaringanExtra	1
abc.data	0
afex	1
AlgDesign	2
GSA	1
spatstat.utils	19
s2	51
MALDIquant	2
gWidgets2tcltk	0
bayesplot	12
bigrquery	17
recipes	57
esquisse	3
fork	1
collections	1
Exact	1
dotCall64	7
brms	1
dtw	1
paletteer	5
lgr	1
network	2
pins	34
riskRegression	1
pkgcache	10
spaMM	1
Runuran	1
shinySelect	0
ggsignif	9
padr	1
visNetwork	3
spatialreg	1
odbc	22
PMCMRplus	2
qgam	1
qrnn	1
RNeXML	1
servr	4
SOAR	0
startupmsg	0
stabs	1
tclust	1
trust	0
tseriesChaos	0
xlsxjars	1
admixtools	0
bayesm	9
BayesianTools	0
bedr	0
bigassertr	1
bigsnpr	0
Boruta	0
cgdsr	1
calibrate	1
chemometrics	1
clustree	1
proj4	19
curatedMetagenomicData	0
amgen.okta.client	1
bench	1
bpcp	1
CBPS	1
MCMCglmm	1
MCMCpack	2
rj.gd	1
Markdown	0
future.callr	3
doRNG	3
fracdiff	3
jsTreeR	1
keyring	6
units	56
pmtables	1
randtoolbox	1
quarto	5
rvg	1
npde	1
ipaddress	1
leaps	1
findpython	12
enc	0
extraTrees	0
rJava	52
expm	17
here	2
klaR	3
rematch2	1
subselect	1
superpc	1
RAthena	12
ipred	32
reshape	2
paws.security.identity	14
paws.cost.management	14
SparseM	6
purr	0
webmockr	1
xaringanthemer	1
dittodb	1
gamlss.dist	3
ggPMX	1
interp	13
partitions	1
Rsmlx	1
reda	1
spam	5
easypar	0
ggforestplot	0
peakPick	0
signature.tools.lib	0
unbalanced	0
WGSmapp	0
CompQuadForm	1
correlation	1
diagram	1
diveRsity	0
EasyABC	0
elliptic	1
ergm.count	0
fdrtool	2
gclus	1
gamlss.data	1
gdistance	0
GillespieSSA	0
glmmML	1
GUTS	0
imagerExtra	0
intervals	4
jiebaR	0
labdsv	1
mboost	2
MIIVsem	0
mltools	0
np	0
operator.tools	1
pan	1
penalized	1
terraTCGAdata	52
cytoMEM	91
DepInfeR	45
extraChIPs	68
biodbNci	45
SPIAT	106
Voyager	100
plotly	134
tidyr	135
openssl	295
blob	90
HiContacts	105
regioneReloaded	47
scales	101
fansi	220
knitr	258
ggtreeDendro	60
simpleSeg	69
goSorensen	52
rrBLUP	1
clusthaplo	0
bigmemory	1
biganalytics	1
bezier	1
forestplot	1
sp	90
RcppParallel	17
cardelino	61
katdetectr	55
epistasisGA	43
scBubbletree	50
zenith	134
bit	59
hms	79
sessioninfo	18
remotes	91
readr	96
shinyjs	5
desc	112
qcNvs	0
mice	14
gsmoothr	5
R.devices	8
JADE	1
perm	8
Illumina450ProbeVariants.db	1
magrene	45
truncnorm	4
ggpointdensity	6
blme	6
isva	6
randomcoloR	6
agricolae	8
NADA	6
Rfast	16
docopt	6
sparsesvd	18
Signac	11
furrr	14
octad	55
proteasy	28
formatR	31
codetools	46
assertive.properties	10
nloptr	25
rcdk	12
wk	55
tfruns	14
yardstick	18
sjPlot	1
acepack	2
vapour	0
spatstat.geom	34
roxygen2	98
tweenr	16
org.Sc.sgd.db	1
stringdist	21
htmlwidgets	193
FNN	72
conquer	2
epiR	3
doBy	1
forecast	5
gridtext	2
h2o	4
languageserver	1
lpSolveAPI	1
pkgdepends	11
memisc	1
pagedown	1
nonmemica	1
pdftools	8
NMdata	1
pointblank	1
smoothHR	0
dtwclust	1
sensitivity	1
ucminf	2
writexl	16
tracee	1
PKNCA	1
gsrc	0
ASExtras4	0
ncdf4	10
phylobase	1
prismatic	1
polspline	3
PoissonSeq	0
rgexf	1
rentrez	1
RMTstat	1
rle	0
rlemon	1
RUnit	8
sampling	1
shinycssloaders	1
sfsmisc	4
signature.tools.lib.v2.1	0
subplex	1
SuperLearner	1
tensorA	9
TailRank	4
timereg	1
tsna	0
worrms	1
wikitaxa	1
WikipediR	2
xmlparsedata	1
BayesFactor	2
BiasedUrn	14
bigreadr	0
BMA	1
bridgesampling	1
corpcor	2
semsim	0
flowworkspace	0
N2R	0
tidyjson	0
highr	59
rtkore	1
HandTill2001	1
gplots	60
msigdbr	3
GOplot	0
RandomFieldsUtils	0
Cubist	1
cxAnalysis	0
Rcgmin	1
Rdpack	44
asht	1
planttfhunter	42
clusterprofielr	0
bit64	11
deSolve	24
huxtable	2
timechange	89
rngWELL	1
rxode2et	1
nlmixr2data	1
vcr	1
ks	6
mclogit	1
loo	12
mlbench	13
plotmo	1
statmod	3
survMisc	2
circlize	32
shape	35
RandomFields	0
npsurv	1
multcomp	48
paws.storage	57
r2d3	1
rngtools	2
campsismod	1
evd	1
precommit	1
profile	0
rhub	3
rclipboard	5
vaultr	1
AneuFinderData	0
BSgenome.Mmusculus.UCSC.mm9	0
gada	0
leafcutter	0
mobster	0
MutationTimeR	0
signature.tools.lib.back	0
DiceDesign	9
DiscriMiner	0
expsmooth	0
fma	0
gamlss.tr	0
ggvis	0
gllvm	0
hypergeo	1
HWxtest	0
janeaustenr	3
Iso	1
interpretR	0
KODAMA	0
LaplacesDemon	1
logspline	1
medflex	0
mitml	1
ncbit	0
mvabund	1
oompaData	4
pd.atdschip.tiling	0
stringfish	6
pkgconfig	3
COTAN	70
biodbNcbi	50
rifi	39
RolDE	49
sSNAPPY	102
cogeqc	68
biodbExpasy	48
GenomicInteractionNodes	48
omicsViewer	52
RAREsim	43
org.Mm.eg.db	13
spaSim	58
sass	228
ps	208
data.table	196
dendextend	28
cluster	71
protGear	53
SpotClean	89
vctrs	307
Rcpp	271
reticulate	62
shinyFiles	13
adegenet	1
graphql	1
dae	1
farver	40
callr	124
posterior	12
caret	33
gert	61
IlluminaHumanMethylationEPICanno.ilm10b2.hg19	6
gmp	16
Matching	2
minpack.lm	4
progressr	44
distributional	14
broom	93
shadowtext	17
foreign	53
shinyhelper	6
openxlsx	26
xgboost	52
TxDb.Mmusculus.UCSC.mm10.knownGene	6
R.filesets	8
mutoss	9
ALL	11
R.cache	2
brave	1
fds	6
shinypanel	7
rsvd	9
GWASExactHW	5
EnsDb.Hsapiens.v75	6
rvest	73
BioNAR	61
WGCNA	12
paws.compute	17
rstan	13
workflows	13
sm	1
repr	2
adabag	1
akima	1
spatstat.sparse	19
phyclust	1
HDInterval	12
png	37
flexmix	1
Brobdingnag	1
BBmisc	1
ggraph	15
dparser	1
mapbayr	1
flexclust	1
insight	8
ggRandomForests	0
iml	0
RefManageR	1
templater	1
osqp	2
mrgmisc	1
dbscan	5
Ckmeans.1d.dp	1
BioCGenerics	0
proto	1
R.matlab	0
resample	0
rms	3
Rtsne	22
shapefiles	1
signal	1
SignifReg	0
soundecology	0
SNPlocs.Hsapiens.dbSNP151.GRCh38	0
survivalROC	1
topicmodels	1
tmle	1
tsne	1
base64	2
BDgraph	0
BeviMed	0
BCEE	0
bigparallelr	1
brglm	1
bmp	1
mi	0
ggstatsplot	2
qualifier	0
scRNAseq	1
expss	6
sommer	1
kernlab	5
ddalpha	1
libcoin	3
randomForest	3
NeuralNetTools	1
RcppTOML	17
ape	24
bdsmatrix	9
Bioconductor	1
pd.hg.u133.plus.2	0
pd.mouse430.2	0
httptest	4
prettyunits	158
bigD	1
cubelyr	0
gap	1
eha	1
gld	1
mlr3	2
modelenv	1
nlmixr2est	1
mrgvalprep	1
RcppDE	1
slickR	0
tidyvpc	1
RApiDatetime	1
emayili	2
pingr	9
ggdag	1
maps	10
ica	3
emdbook	12
ivpack	0
km.ci	2
logistf	12
microbenchmark	1
segmented	18
config	23
rex	17
git2r	21
rstanarm	1
shinythemes	2
ISwR	1
ModelMetrics	2
lsei	1
optparse	37
paws	14
pwr	1
quantreg	60
dockerfiler	1
drake	9
palmerpenguins	1
qs	6
rticles	1
sf	43
org.Ce.eg.db	1
ctree	0
NoiseFiltersR	0
tkrgl	0
TxDb.Hsapiens.UCSC.hg38.knownGene	1
GenomeInfoDB	0
conditionz	1
compositions	2
cyclocomp	20
distrEx	0
DTRreg	0
extrafontdb	1
gap.datasets	1
GenSA	2
grpreg	1
influenceR	2
irace	0
kedd	0
Lmoments	1
locfdr	0
lqa	0
meta	1
MetaSKAT	0
networkDynamic	1
oddsratio	0
pbdZMQ	2
pheatmap	1
crisprScore	163
RCX	94
standR	116
CBEA	106
MetaboAnnotation	283
borealis	51
updateObject	45
biodbMirbase	34
XVectorb	0
factR	53
processx	218
commonmark	137
dplyr	236
renv	145
TSP	18
iterators	7
tinytex	266
shiny	210
generics	21
httr	183
minqa	81
superheat	1
ggExtra	4
gaston	1
MSstatsShiny	101
signifinder	53
ggplot2	251
digest	287
DBI	180
RCurl	120
demuxmix	219
consICA	105
IlluminaHumanMethylation450kanno.ilmn12.hg19	7
fontawesome	111
testthat	228
readxl	87
e1071	49
lixoftConnectors.2	0
igraph	148
patchwork	56
SeuratObject	32
ggfun	43
gargle	78
dtplyr	42
nnet	64
admisc	22
aroma.core	8
aws.s3	6
ash	6
ATACCoGAPS	45
filelock	56
CircSeqAlignTk	52
pRolocdata	10
RcppZiggurat	6
RcppHNSW	20
egg	6
NMF	12
modelr	42
NetActivity	43
purrr	136
reldist	9
snow	11
tune	14
locfit	61
crrri	0
ABSOLUTE	0
ragg	129
flowWorkspaceData	1
RcppEigen	122
lintr	49
mixsqp	21
promises	143
fastmap	90
utf8	207
hgug4112a.db	0
tidygraph	25
graphlayouts	36
cachem	156
collapse	1
fixest	1
datawizard	5
bayestestR	3
gsDesign	1
duckdb	2
mlr	1
projpred	1
party	9
JuliaCall	0
rgl	3
scatterplot3d	25
rstpm2	1
scam	1
webfakes	1
vegan	5
spatstat.core	14
babelgene	4
datapipeline	1
pryr	13
pscl	1
RcppRoll	1
rda	0
RcppProgress	1
sem	0
SimSeq	0
stopwords	1
styler	67
TMB	33
uroot	0
audio	1
BB	1
bartMachine	1
BayesPen	0
biom	0
bridgedist	0
ComICS	0
Matrix.utils	1
ellipsis	14
kegggraph	0
robustbase	27
gower	15
inum	3
speckle	153
SingleCelLExperiment	0
Lahman	1
ParamHelpers	0
RWiener	1
aldvmm	1
C50	1
clock	20
TCGAbiolinksGUI.data	1
rj	1
cobalt	2
DEoptim	1
msm	6
jpeg	11
juicyjuice	1
gamlss	2
GPArotation	21
nanotime	1
rmutil	0
log4r	3
XLConnect	1
nlmixr2lib	1
ggbeeswarm	4
mclust	12
NMcalc	1
DEoptimR	26
StanHeaders	14
conflicted	14
dimRed	1
fitdistrplus	19
modeltools	1
pander	3
spatial	38
apcluster	1
ymlthis	0
fields	5
lbfgs	1
nleqslv	1
RApiSerialize	6
saemix	1
tidyposterior	1
org.Bt.eg.db	1
org.Gg.eg.db	1
org.Cf.eg.db	1
org.Dr.eg.db	1
CollessLike	0
NNLM	1
pctGCdata	0
SPACox	0
sROC	0
contfrac	1
deal	0
DiagrammeR	4
distillery	0
dummies	0
fossil	0
GPfit	1
heatmap3	0
ineq	0
IDPmisc	3
lda	0
longmemo	0
magick	13
mediation	1
NLP	0
Palimpsest	0
pastecs	0
pbivnorm	1
phytools	4
SBGNview.data	1
castor	2
multidplyr	0
nanostringr	1
comapr	58
TEKRABber	100
TREG	44
fastreeR	72
iSEEhex	147
SpliceWiz	82
CTSV	52
PSMatch	432
qmtools	50
GRaNIE	140
MBECS	62
pareg	49
crisprViz	114
cpp11	201
viridis	138
crisprDesign	134
rgoslin	63
xfun	302
yaml	137
DT	191
shinyBS	9
nnSVG	101
gemma.R	57
glue	121
GenomAutomorphism	41
lifecycle	184
car	37
maptools	19
rsvg	3
RIdeogram	1
ghql	1
sys	147
isoband	46
scDDboost	43
DNAfusion	48
EasyCellType	54
viridisLite	103
credentials	39
cli	221
tzdb	79
future	130
latticeExtra	10
systemfonts	181
class	50
leiden	21
sctransform	17
officer	21
lubridate	81
venn	9
shinydashboardPlus	10
R.huge	6
metap	10
TENxIO	50
rainbow	9
EnsDb.Hsapiens.v86	6
zCompositions	8
dqrng	38
qlcMatrix	14
PRROC	6
GenABEL	2
paws.common	59
sn	13
MetaPhOR	55
sc3	0
crayon	79
hwriter	2
Formula	13
shinyjqui	1
umap	12
safetyexploreR	1
cmdstanr	1
ADGofTest	1
aod	1
arm	1
gsw	0
seqminer	12
paws.application.integration	14
tarchetypes	5
org.Ss.eg.db	1
spatstat.random	33
timeDate	33
glmnet	22
DRR	1
trimcluster	0
chron	3
cem	1
datamods	7
gghighlight	1
broom.helpers	5
lpSolve	15
nhanesA	1
matrixcalc	1
ggtext	2
mets	1
plumber	12
vegawidget	1
systemfit	1
targets	6
seurat	1
deseq	0
plot3Drgl	0
profileModel	1
pspline	1
RInside	0
RJSONIO	15
Rserve	1
Rook	1
rzmq	2
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signature.tools.lib.v2.1.2	0
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r	1
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DegCre	8
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ore	1
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od	1
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