RNAither
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RNAither.
Statistical analysis of high-throughput RNAi screens
Bioconductor version: 3.11
RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.
Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany
Maintainer: Lars Kaderali <lars.kaderali at uni-greifswald.de>
citation("RNAither")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAither")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RNAither")| RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, CellBasedAssays, GO, ImmunoOncology, Preprocessing, QualityControl, Software, Visualization |
| Version | 2.36.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (15.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), topGO, RankProd, prada |
| Imports | geneplotter, limma, biomaRt, car, splots, methods |
| System Requirements | |
| URL |
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RNAither_2.36.0.tar.gz |
| Windows Binary | RNAither_2.36.0.zip |
| macOS 10.13 (High Sierra) | RNAither_2.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RNAither |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RNAither |
| Bioc Package Browser | https://code.bioconductor.org/browse/RNAither/ |
| Package Short Url | https://bioconductor.org/packages/RNAither/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |