prada
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see prada.
Data analysis for cell-based functional assays
Bioconductor version: 3.11
Tools for analysing and navigating data from high-throughput phenotyping experiments based on cellular assays and fluorescent detection (flow cytometry (FACS), high-content screening microscopy).
Author: Florian Hahne <florian.hahne at novartis.com>, Wolfgang Huber <huber at ebi.ac.uk>, Markus Ruschhaupt, Joern Toedling <toedling at ebi.ac.uk>, Joseph Barry <joseph.barry at embl.de>
Maintainer: Florian Hahne <florian.hahne at novartis.com>
citation("prada")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("prada")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("prada")| Combining prada output and cellHTS2 | R Script | |
| Removal of contaminants from FACS data | R Script | |
| Reference Manual |
Details
| biocViews | CellBasedAssays, ImmunoOncology, Software, Visualization |
| Version | 1.63.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | LGPL |
| Depends | R (>= 2.10), Biobase, RColorBrewer, grid, methods, rrcov |
| Imports | Biobase, BiocGenerics, graphics, grDevices, grid, MASS, methods, RColorBrewer, rrcov, stats4, utils |
| System Requirements | |
| URL |
See More
| Suggests | cellHTS2, tcltk |
| Linking To | |
| Enhances | |
| Depends On Me | facsDorit, RNAither |
| Imports Me | cellHTS2, cmapR |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | prada_1.63.0.tar.gz |
| Windows Binary | prada_1.63.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/prada |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/prada |
| Bioc Package Browser | https://code.bioconductor.org/browse/prada/ |
| Package Short Url | https://bioconductor.org/packages/prada/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |