genefilter
genefilter: methods for filtering genes from high-throughput experiments
Bioconductor version: Release (3.19)
Some basic functions for filtering genes.
Author: Robert Gentleman [aut], Vincent J. Carey [aut], Wolfgang Huber [aut], Florian Hahne [aut], Emmanuel Taiwo [ctb] ('howtogenefinder' vignette translation from Sweave to RMarkdown / HTML.), Khadijah Amusat [ctb] (Converted genefilter vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("genefilter")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("genefilter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genefilter")
03 - Additional plots for: Independent filtering increases power for detecting differentially expressed genes, Bourgon et al., PNAS (2010) | R Script | |
howtogenefinder.knit | HTML | R Script |
Using the genefilter function to filter genes from a microarray | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Microarray, Software |
Version | 1.86.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
License | Artistic-2.0 |
Depends | |
Imports | MatrixGenerics(>= 1.11.1), AnnotationDbi, annotate, Biobase, graphics, methods, stats, survival, grDevices |
System Requirements | |
URL |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | genefilter_1.86.0.tar.gz |
Windows Binary | genefilter_1.86.0.zip (64-bit only) |
macOS Binary (x86_64) | genefilter_1.86.0.tgz |
macOS Binary (arm64) | genefilter_1.86.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/genefilter |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/genefilter |
Bioc Package Browser | https://code.bioconductor.org/browse/genefilter/ |
Package Short Url | https://bioconductor.org/packages/genefilter/ |
Package Downloads Report | Download Stats |