Package: graph

Version: 1.10.6

Command: /loc/biocbuild/1.8d/R/bin/R CMD check graph_1.10.6.tar.gz

RetCode: 0

Time: 119.1 seconds

Status: OK

CheckDir: graph.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.8d/Rpacks/graph.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.10.6'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating graph-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating graph-manual.tex ... OK
* checking graph-manual.tex ... OK

* Installing *source* package 'graph' ...
** libs
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c graph.c -o graph.o
graph.c: In function `graph_sublist_assign':
graph.c:351: warning: unused variable `el'
graph.c: In function `graph_is_adjacent':
graph.c:420: warning: suggest parentheses around assignment used as truth value
gcc -shared -L/usr/local/lib -o graph.so graph.o   
** R
** data
** inst
** save image
Loading required package: Ruuid
** help
 >>> Building/Updating help pages for package 'graph'
     Formats: text html latex example 
  DFS                               text    html    latex   example
  IMCA                              text    html    latex   example
  acc-methods                       text    html    latex   example
  addEdge                           text    html    latex   example
  addNode                           text    html    latex   example
  adj-methods                       text    html    latex   example
  apoptosisGraph                    text    html    latex   example
  asGraphProperty                   text    html    latex   example
  attrData-class                    text    html    latex   example
  attrDataItem-methods              text    html    latex
  attrDefaults-methods              text    html    latex
  aveNumEdges                       text    html    latex   example
  biocRepos                         text    html    latex   example
  boundary                          text    html    latex   example
  buildRepDepGraph                  text    html    latex   example
  calcProb                          text    html    latex   example
  calcSumProb                       text    html    latex   example
  clearNode                         text    html    latex   example
  clusterGraph-class                text    html    latex   example
  clusteringCoefficient-methods     text    html    latex   example
  combineNodes                      text    html    latex   example
  distGraph-class                   text    html    latex   example
  duplicatedEdges                   text    html    latex   example
  edgeData-methods                  text    html    latex
  edgeDataDefaults-methods          text    html    latex
  edgeMatrix                        text    html    latex   example
  edgeWeights                       text    html    latex   example
  fromGXL-methods                   text    html    latex   example
  gEdge-class                       text    html    latex   example
  gNode-class                       text    html    latex   example
  generalGraph-class                text    html    latex   example
  graph-class                       text    html    latex   example
  graph2SparseM                     text    html    latex   example
  graphAM-class                     text    html    latex   example
  graphExamples                     text    html    latex   example
  graphH-class                      text    html    latex   example
  graphID-class                     text    html    latex
  graphNEL-class                    text    html    latex   example
  hashtable-class                   text    html    latex   example
  hashtable                         text    html    latex   example
  inEdges                           text    html    latex   example
  internal                          text    html    latex
  isAdjacent-methods                text    html    latex
  isDirected-methods                text    html    latex
  listEdges                         text    html    latex   example
  matrix2Graph                      text    html    latex   example
  mostEdges                         text    html    latex   example
  nodeData-methods                  text    html    latex
  nodeDataDefaults-methods          text    html    latex
  numNoEdges                        text    html    latex   example
  propertyHolder-class              text    html    latex   example
  randomEGraph                      text    html    latex   example
  randomGraph                       text    html    latex   example
  randomNodeGraph                   text    html    latex   example
  removeEdge                        text    html    latex   example
  removeNode                        text    html    latex   example
  simpleEdge-class                  text    html    latex   example
  standardLabeling                  text    html    latex   example
  subGraph                          text    html    latex   example
  toDotR-methods                    text    html    latex   example
  ugraph                            text    html    latex   example
  validGraph                        text    html    latex   example
  write.tlp                         text    html    latex
** building package indices ...
* DONE (graph)